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Name : pscD (PA1717) Accession : NP_250408.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Virulence Product : type III export protein PscD Function : - COG functional category : - COG ID : - EC number : - Position : 1861297 - 1862595 bp Length : 1299 bp Strand : + Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa) DNA sequence : ATGGCCTGGAAGATCCGCTTCTACAGCGGGCTGAACCAGGGCGCCGAAGTCTCGCTCGGAGAGGGCCGGGTGGCGCTTGG CAGCGATCCGTTGCAGGCCGACCTGGTGTTGCTCGACGAGGGCATCGCGGCAGTCCACCTGGTGCTCGAGGTCGATGCCC AGGGCGTGCGCCTGCTGGAGTGGGCGGAGGGCTGCGAGCCTCGCCAGGACGGCCAGGCGCAAGTCGCCGGAGCGATCCTG CAGGCGCTTGCCGGGCAGACCTGCGGCCCGCTGCGCTGGGCATTCTGCGACCCGCAGCGGAGTTTTCCCGAGCGTTTCCC CGAAGCCGAGGTGCAGACCGCGCCAGTGCGCCGCAAGTCGTCCGCCCGTGCCGGCGGGGCCTGGCTGCTCGGCGTCAGCC TGGCGCTGGCGCTGTGTCTGCTGGGCATGCTCGTCGAACCCTGGTCGGCCCGCCAGCACGGCATGGCCGGCGAGGAGCCC CTGGCGAAGGTGCGCGCCTACCTGCGCGAGCAGGGCATGAGCGAGGTGGATGTGCAGCGCCAGGGCGACAGTCTCCTGCT CGGCGGCTACCTGGAGGACAACGCCCGGCGCCTGGCGCTACAGCGCTACCTCGATGGCAGCGGCGTGGACTACCGACTGG AAGCACGGAGCATGGAAGACATTCGCCAGGGCGTGGATTTCATCCTGCAGAAATTCGGCTATCGGCAGATCCTCAGCAGC AACGCGGACAAGCCTGGCTGGGTCCGGCTCAACGGCGAACTGGCGGAACAGGACGAACGCTGGGCGCGGATCGACGCATT GCTGGAGTCCGAGGTGCCGGGCCTGCTCGGGGTGGAAAACCAGGTCCGGGTGGCCGGCTCGCACCTACGCCGCCTCGAGC GCCTGCTGGCGGACGCCGGCCTCGACCGGCAACTGAGTTTCCGCGAGCGCGGCGAGCGCATCGAGTTGAGCGGCACGCTC GACGAGGTCCAGCTCAGCGCCTTCTACCGCCTGCAGCGCGAGTTCCAGCAGGAATTCGGCAACCGCCCGAGCCTGGTGCT GCTCAGTCGCGGCAAGCGCGCCAGCGGCGACGAACTGGAGTTCACGATTCGCTCGGTGTCGCTGGGGCGGGTGCCCTATG TAGTGCTCGGCGACGGCCAGAAATACCCGGTGGGCGCCTCGACATCCCGCGGTGTGCGAATCCTCGCCATCGAGCCGGAG TCGATCCTGGTGGCCCGCGGCAAGCAGCGTTTCATCATCAATCTCAAAGGGGAGGTGCTCCATGATGACAGCCTTGGAAA CGCGACTGTCGGTCGCTGA Protein sequence : MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLEWAEGCEPRQDGQAQVAGAIL QALAGQTCGPLRWAFCDPQRSFPERFPEAEVQTAPVRRKSSARAGGAWLLGVSLALALCLLGMLVEPWSARQHGMAGEEP LAKVRAYLREQGMSEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFGYRQILSS NADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLERLLADAGLDRQLSFRERGERIELSGTL DEVQLSAFYRLQREFQQEFGNRPSLVLLSRGKRASGDELEFTIRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPE SILVARGKQRFIINLKGEVLHDDSLGNATVGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 2e-101 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pscD | NP_250408.1 | type III export protein PscD | VFG0212 | Protein | 0.0 | 100 |
| pscD | NP_250408.1 | type III export protein PscD | VFG0403 | Protein | 4e-76 | 43 |
