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Name : pscC (PA1716) Accession : NP_250407.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Virulence Product : type III secretion outer membrane protein PscC precursor Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 1859493 - 1861295 bp Length : 1803 bp Strand : + Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa) DNA sequence : ATGCGCCGCCTGCTGATCGGCGGACTGCTGGCGCTGCTGCCTGGCGCGGTCTTGCGCGCGCAGCCGCTGGACTGGCCCAG CCTGCCTTACGACTATGTGGCGCAGGGCGAAAGCCTGCGCGACGTGCTGGCCAACTTCGGCGCCAACTACGATGCCTCGG TGATCGTCAGCGACAAGGTCAACGACCAGGTCAGCGGTCGCTTCGACCTGGAAAGCCCGCAGGCCTTCCTGCAGTTGATG GCCTCCCTCTACAACCTCGGCTGGTACTACGACGGCACCGTGCTGTACGTATTCAAGACCACCGAGATGCAATCGCGGCT GGTGAGGCTGGAGCAGGTCGGCGAGGCCGAGCTGAAGCGCGCGCTGACCGCCGCCGGTATCTGGGAGGCGCGCTTCGGCT GGCGTGCCGACCCTTCCGGGCGACTGGTGCACGTGTCCGGTCCGGGGCGCTATCTCGAACTGGTCGAGCAGACCGCCCAG GTGCTGGAGCAGCAATACACCCTGCGCAGCGAAAAGACCGGCGACCTCAGCGTGGAGATCTTCCCGCTGCGCTATGCGGT CGCCGAGGACCGCAAGATCGAGTACCGCGACGACGAGATCGAGGCGCCGGGCATCGCCAGCATCCTCTCGCGGGTGCTCA GCGATGCCAACGTGGTTGCGGTGGGCGACGAGCCGGGCAAGCTGCGCCCGGGACCGCAATCGAGCCATGCGGTGGTCCAG GCGGAACCGTCGCTGAATGCGGTGGTGGTGCGCGACCACAAGGACCGGTTGCCCATGTATCGCCGCCTGATCGAAGCCCT CGACCGGCCCTCGGCGCGGATCGAGGTCGGCTTGTCGATCATCGACATCAATGCCGAGAACCTCGCCCAGCTGGGCGTCG ACTGGAGCGCCGGGATTCGCCTGGGCAACAACAAGTCGATCCAGATCCGCACCACCGGCCAGGATAGCGAGGAGGGCGGC GGCGCCGGTAACGGGGCGGTCGGCAGCCTGGTGGACAGTCGCGGGCTGGATTTCCTGCTGGCCAAGGTCACCCTGTTGCA GAGCCAGGGGCAGGCGCAGATCGGATCCCGGCCGACCCTGCTGACCCAGGAGAATACCCAGGCGGTGCTCGACCAGAGCG AAACCTACTATGTGCGGGTCACGGGTGAGCGGGTGGCCGAGCTGAAGGCGATCACCTACGGCACCATGCTGAAAATGACG CCGCGAGTGGTGACTCTCGGCGATACGCCGGAGATCAGCCTCAGCCTGCACATCGAGGACGGCAGCCAGAAACCCAATAG CGCCGGCCTGGACAAGATCCCCACGATCAACCGCACGGTGATCGATACCATCGCCCGCGTGGGCCATGGCCAGAGCCTGC TGATCGGCGGCATCTACCGCGACGAACTGAGCCAGAGCCAGCGCAAGGTACCCTGGCTCGGCGACATTCCCTATCTCGGC GCGCTGTTCCGCACTACCGCGGACACCGTGCGCCGCTCGGTGCGGCTGTTCCTCATCGAGCCGCGGCTGATCGACGATGG CGTCGGCCATTACCTGGCGCTGAACAACCGTCGCGACCTGCGCGGCGGCCTGCTTGAAATCGACGAGTTGTCGAACCAGA GCCTGTCGTTGCGCAAGCTGCTCGGTAGCGCCCGCTGCCAGGCGCTGGCGCCGGCCAGGGCCGAACAGGAGCGCTTGCGC CAGGCCGGCCAGGGTTCGTTCCTCACGCCCTGCCGGATGGGTGCGCAGGAGGGCTGGCGGGTGACCGACGGCGCCTGTCC CAAAGACGGCGCCTGGTGCGTCGGCGCGGAGCGCGGGAATTAG Protein sequence : MRRLLIGGLLALLPGAVLRAQPLDWPSLPYDYVAQGESLRDVLANFGANYDASVIVSDKVNDQVSGRFDLESPQAFLQLM ASLYNLGWYYDGTVLYVFKTTEMQSRLVRLEQVGEAELKRALTAAGIWEARFGWRADPSGRLVHVSGPGRYLELVEQTAQ VLEQQYTLRSEKTGDLSVEIFPLRYAVAEDRKIEYRDDEIEAPGIASILSRVLSDANVVAVGDEPGKLRPGPQSSHAVVQ AEPSLNAVVVRDHKDRLPMYRRLIEALDRPSARIEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGG GAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVTGERVAELKAITYGTMLKMT PRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLG ALFRTTADTVRRSVRLFLIEPRLIDDGVGHYLALNNRRDLRGGLLEIDELSNQSLSLRKLLGSARCQALAPARAEQERLR QAGQGSFLTPCRMGAQEGWRVTDGACPKDGAWCVGAERGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pscC | NP_250407.1 | type III secretion outer membrane protein PscC precursor | VFG0211 | Protein | 0.0 | 100 |
| pscC | NP_250407.1 | type III secretion outer membrane protein PscC precursor | VFG0402 | Protein | 0.0 | 64 |
