Gene Information

Name : popD (PA1709)
Accession : NP_250400.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : translocator outer membrane protein PopD precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1854849 - 1855736 bp
Length : 888 bp
Strand : +
Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

DNA sequence : 
ATGATCGACACGCAATATTCCCTGGCGGCTACCCAGGCCGCGATCCCCTCCGAGCCGATCGCTCCCGGCGCCGCCGGGCG
TTCCGTCGGCACGCCGCAAGCGGCTGCGGACCTGCCGCAGGTGCCGGCCGCGCGGGCCGACCGGGTCGAACTGAACGCTC
CGCGCCAGGTGCTCGACCCGGTGCGCATGGAAGCGGCCGGCAGCGAGCTGGACAGCAGCGTCGAGCTTCTGCTGATTCTC
TTCCGCATCGCGCAGAAAGCGCGCGAGCTGGGCGTGCTCCAGCGCGACAACGAGAACCAGTCGATCATCCACGCGCAGAA
GGCGCAGGTGGACGAGATGCGCAGCGGCGCCACGCTGATGATCGCCATGGCGGTGATCGCTGGCGTCGGCGCATTGGCCT
CGGCGGTGGTCGGCAGCCTCGGCGCGTTGAAGAACGGCAAGGCCATCAGTCAAGAGAAGACCCTGCAGAAGAACATCGAT
GGGCGCAACGAACTGATCGACGCGAAGATGCAGGCGCTTGGCAAGACCTCCGACGAGGATCGCAAGATCGTCGGCAAGGT
CTGGGCGGCGGACCAGGTGCAGGACAGTGTGGCGTTGCGTGCGGCGGGCCGTGCCTTCGAGAGCCGCAACGGCGCCCTGC
AGGTGGCCAACACGGTGATCCAGTCCTTCGTCCAGATGGCCAACGCCTCGGTCCAGGTGCGCCAGGGCGAATCGCAGGCG
AGCGCCCGGGAAGGAGAGGTCAACGCCACCATCGGGCAGAGCCAGAAGCAGAAGGTCGAGGACCAGATGAGCTTCGATGC
CGGCTTCATGAAGGACGTCCTGCAGCTCATCCAGCAGTACACCCAGAGCCATAACCAGGCCTGGCGTGCGGCGGCCGGAG
TGGTCTGA

Protein sequence : 
MIDTQYSLAATQAAIPSEPIAPGAAGRSVGTPQAAADLPQVPAARADRVELNAPRQVLDPVRMEAAGSELDSSVELLLIL
FRIAQKARELGVLQRDNENQSIIHAQKAQVDEMRSGATLMIAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNID
GRNELIDAKMQALGKTSDEDRKIVGKVWAADQVQDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQA
SAREGEVNATIGQSQKQKVEDQMSFDAGFMKDVLQLIQQYTQSHNQAWRAAAGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopD AAO18056.1 LopD Virulence TTSS locus Protein 9e-57 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popD NP_250400.1 translocator outer membrane protein PopD precursor VFG0204 Protein 4e-123 100