Gene Information

Name : popB (PA1708)
Accession : NP_250399.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : translocator protein PopB
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 1853665 - 1854837 bp
Length : 1173 bp
Strand : +
Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

DNA sequence : 
ATGAATCCGATAACGCTTGAACGCGCCGGACTGCCCTACGGGGTGGCCGACGCCGGGGATATCCCGGCGCTCGGCAGGCC
GGTCGCGAGGGATGTCGAGAGTCTGCGGGTGGAGCGCCTGGCGGCGCCGGCCGCGGCTTCCGCGAGCGGCACGGGGGTGG
CGCTGACGCCGCCGTCCGCAGCCAGCCAGCAGCGCCTGGAGGTCGCCAATCGTGCGGAGATCGCCAGCCTGGTGCAGGCA
GTGGGCGAGGATGTCGGACTGGCGCGGCAGGTTGTGCTGGCCGGCGCTTCGACGCTGTTGTCCGCCGGCCTGATGTCGCC
GCAGGCGTTCGAGATCGAGCTGGCGAAAATCACCGGCGAAGTCGAGAACCAGCAGAAGAAACTCAAGCTGACCGAAATCG
AGCAGGCGCGAAAGCAGAACCTGCAGAAGATGGAGGACAACCAGCAGAAGATCAGGGAGTCGGAAGAAGCCGCGAAAGAA
GCCCAGAAGTCCGGTCTGGCAGCCAAAATCTTTGGTTGGATCAGTGCAATAGCTTCGATCATCGTCGGCGCAATCATGGT
GGCAACCGGCGTCGGCGCGGCCGCGGGTGCACTGATGATCGCGGGCGGTGTCATGGGAGTGGTCTCCCAGTCGGTACAGC
AGGCAGCCGCGGACGGATTGATCAGCAAGGAAGTGATGGAAAAGCTCGGCCCGGCACTGATGGGTATCGAGATGGCCGTC
GCGCTGCTGGCGGCGGTGGTCAGCTTCGGCGGCTCAGCGGTCGGCGGGCTGGCCAGGCTGGGCGCGAAGATCGGCGGCAA
GGCGGCCGAGATGACCGCCAGCCTGGCGAGCAAGGTCGCCGACCTGGGCGGCAAGTTCGGCAGTTTGGCCGGCCAATCGC
TGTCGCACTCGCTGAAACTCGGCGTGCAGGTTTCCGACCTGACCCTGGACGTCGCCAACGGCGCGGCCCAGGCCACTCAT
TCGGGATTCCAGGCGAAGGCCGCGAACCGCCAGGCCGACGTGCAGGAATCGCGTGCCGACCTGACCACCCTGCAGGGCGT
GATCGAGCGCCTGAAGGAAGAGCTGAGCCGCATGCTGGAAGCATTCCAGGAAATCATGGAGCGGATCTTCGCCATGCTCC
AGGCCAAGGGTGAAACCCTGCACAACCTGTCCAGCCGACCGGCAGCGATCTGA

Protein sequence : 
MNPITLERAGLPYGVADAGDIPALGRPVARDVESLRVERLAAPAAASASGTGVALTPPSAASQQRLEVANRAEIASLVQA
VGEDVGLARQVVLAGASTLLSAGLMSPQAFEIELAKITGEVENQQKKLKLTEIEQARKQNLQKMEDNQQKIRESEEAAKE
AQKSGLAAKIFGWISAIASIIVGAIMVATGVGAAAGALMIAGGVMGVVSQSVQQAAADGLISKEVMEKLGPALMGIEMAV
ALLAAVVSFGGSAVGGLARLGAKIGGKAAEMTASLASKVADLGGKFGSLAGQSLSHSLKLGVQVSDLTLDVANGAAQATH
SGFQAKAANRQADVQESRADLTTLQGVIERLKEELSRMLEAFQEIMERIFAMLQAKGETLHNLSSRPAAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 3e-47 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popB NP_250399.1 translocator protein PopB VFG0203 Protein 1e-119 100
popB NP_250399.1 translocator protein PopB VFG0379 Protein 8e-35 46