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Name : pcrD (PA1703) Accession : NP_250394.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Virulence Product : type III secretory apparatus protein PcrD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1849403 - 1851523 bp Length : 2121 bp Strand : + Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa) DNA sequence : ATGAACGACCTGAGCGGGCTTCTCGGCCGGGTCGGCGAGCGCAAGGACATCCTGCTGGTGGTGTTGCTGCTGGCGGTGGT GTTCATGATGGTGCTGCCGCTGCCACCGCTGCTGCTGGACATCCTCATCGCCGTCAACATCACCATCTCCGTGGTCCTGC TGATGATGTCGGTGTACATCGGCTCGCCGTTGCAGTTCTCGGTGTTCCCGGCGGTGCTGCTGATCACCACGCTGTTCCGC CTGGCGCTGTCGGTGAGCACCACACGGATGATCCTGCTGCAGGCCGACGCGGGGCAGATCGTCAACACCTTCGGCAGCTT CGTGGTCGGCGGCAACCTGGTGGTGGGCATCATCATCTTCCTGATCATCACCATCGTGCAGTTCCTGGTGATCACCAAGG GTGCCGAGCGGGTCGCCGAGGTCAGCGCGCGCTTTTCCCTGGATGCCATGCCGGGCAAGCAGATGAGCATCGACGGCGAC ATGCGTGCTGGCGTGATCGATGTCAACGAGGCGCGGGCGCGGCGCGCGGTGATCGAAAAGGAAAGCCAGATGTTCGGCTC CATGGACGGCGCGATGAAGTTCGTCAAGGGCGACGCCATCGCCGGGCTGATCATCATCGTCGTCAACATCCTCGGCGGCA TCGCCATCGGCGTCACGCAGAAGGGCCTGAGCACCGCCGACGCGCTGCAACTGTACGCGGTGCTGACCGTCGGCGATGGC ATGGTCTCGCAGGTGCCGGCGTTGCTGATCGCCATCACCGCCGGGATCATCGTCACCCGGGTGTCTTCCGACGAATCGGC GGACCTCGGCAGCGACATCGGCGAACAGGTGGTGGCGCAGCCCAAGGCGCTGCTGATCGGCGGCCTGTTGCTGGTGCTGT TCGGCCTGATTCCCGGTTTCCCGACCCTGACCTTCCTGGCTCTCGCGCTGCTGGTTGGCGGCGGCGGCTACTTCATGCTC TGGCGCCAGCGGGCCCAGGCCAGCGCCGGTTCCCGCGACCTGCCGGCGTTGCTCGCGCAGGGCGCCGGAGCGCCATCGGC CAAGGCGCGTGGCAAGGCTGGCGGCGGCAAGCCGAAGGCCGGGCGTCTCGCCGAGCAGGAAGAATTCGCCCTCACCGTGC CGTTGCTGATCGACGTCGATGCCAGCCTCCAGGAACGTCTCGAGGCGATGTCGCTGAACGAGGAGCTGGTGCGGGTACGA CGCGCGTTGTACCTGGATTTCGGCGTGCCGTTCCCGGGTATCCACTTGCGCTTCAACGAAGCGATGGGCGATGGCGAATA CCTGGTGCAGCTACAGGAGGTCCCGGTCGCGCGCGGATGCCTGCGGCCGGGCTGGTTGCTGGTGCGCGAACGCGCCGCGC AGCTGGAATTGCTCGCGGTCCCCCACGAGCCGGCAGAGCTGCAGGTGCCGGGAGAAGAGGCGAGCTGGGTGGAGCAGGCG CATCAGGATCGCCTGGAGCGTTCCGGCTGTGCCTGCCTGGGCCTGGAGCAGGTGCTCACCTGGCACCTGTCCCATGTGCT GCGGGAGTACGCCGAGGATTTCATCGGCATCCAGGAGACGCGCTACCTGCTGGAGCAGATGGAGCAGGGTTACGGCGAGC TGGTGAAGGAGGCGCAGCGGATCGTTCCCCTGCAGCGGATGACCGAGATTCTCCAGCGCCTGGTCGGCGAGGACATCTCG ATCCGCAACATGCGGGCGATCCTCGAGGCGATGGTGGAGTGGGGGCAGAAGGAGAAGGACGTGGTGCAGCTCACCGAGTA CATCCGCAGCAGCCTCAAGCGCTACATCTGCTACAAGTACTCCAGCGGCAACAATATCCTTCCCGCCTATCTGCTGGACC AGGCGGTGGAGGAGCAGATCCGCGGTGGCATCCGCCAGACCAGCGCCGGCAGCTACCTGGCCCTCGACCCGGCGATAACC CAGGCCTTCCTCGAGCGCGTGCGGCAGACCGTCGGCGATCTCGCGCAGATGCAGAACCGGCCGGTGCTGATCGTTTCCAT GGATATCCGCCGCTACGTGCGCAAGCTGGTGGAGAGCGACTATGCCGGGCTGCCGGTGCTGTCCTACCAGGAGCTGACCC AGCAGATCAACATCCAGCCGCTTGGCAGGATCGTGTTGTGA Protein sequence : MNDLSGLLGRVGERKDILLVVLLLAVVFMMVLPLPPLLLDILIAVNITISVVLLMMSVYIGSPLQFSVFPAVLLITTLFR LALSVSTTRMILLQADAGQIVNTFGSFVVGGNLVVGIIIFLIITIVQFLVITKGAERVAEVSARFSLDAMPGKQMSIDGD MRAGVIDVNEARARRAVIEKESQMFGSMDGAMKFVKGDAIAGLIIIVVNILGGIAIGVTQKGLSTADALQLYAVLTVGDG MVSQVPALLIAITAGIIVTRVSSDESADLGSDIGEQVVAQPKALLIGGLLLVLFGLIPGFPTLTFLALALLVGGGGYFML WRQRAQASAGSRDLPALLAQGAGAPSAKARGKAGGGKPKAGRLAEQEEFALTVPLLIDVDASLQERLEAMSLNEELVRVR RALYLDFGVPFPGIHLRFNEAMGDGEYLVQLQEVPVARGCLRPGWLLVRERAAQLELLAVPHEPAELQVPGEEASWVEQA HQDRLERSGCACLGLEQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEQGYGELVKEAQRIVPLQRMTEILQRLVGEDIS IRNMRAILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYSSGNNILPAYLLDQAVEEQIRGGIRQTSAGSYLALDPAIT QAFLERVRQTVGDLAQMQNRPVLIVSMDIRRYVRKLVESDYAGLPVLSYQELTQQINIQPLGRIVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 0.0 | 80 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pcrD | NP_250394.1 | type III secretory apparatus protein PcrD | VFG0198 | Protein | 0.0 | 100 |
| pcrD | NP_250394.1 | type III secretory apparatus protein PcrD | VFG0384 | Protein | 0.0 | 79 |
