Gene Information

Name : popN (PA1698)
Accession : NP_250389.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : type III secretion outer membrane protein PopN precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1847227 - 1848093 bp
Length : 867 bp
Strand : +
Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

DNA sequence : 
ATGGACATCCTCCAGAGTTCCTCCGCCGCGCCCCTCGCGCCGCGGGAAGCGGCCAACGCCCCCGCGCAGCAGGCTGGCGG
CAGCTTTCAGGGCGAGCGCGTCCACTACGTTTCCGTTTCGCAGTCGCTGGCCGATGCCGCGGAAGAGCTGACCTTCGCCT
TTTCCGAGCGCGCCGAGAAATCCCTGGCCAAGCGCCGCCTGAGCGACGCCCATGCGCGCCTGAGCGAAGTCCAGGCCATG
CTGCAGGAGTACTGGAAGCGCATTCCGGACCTGGAAAGCCAGCAGAAGCTCGAGGCGCTGATCGCCCACCTGGGCAGCGG
CCAACTGAGCAGCCTGGCGCAGCTCAGCGCTTACCTGGAGGGCTTCTCCAGCGAGATCAGCCAGCGCTTCCTGGCGCTGT
CGCGGGCGCGCGACGTCCTGGCCGGGCGGCCGGAGGCGCGGGCGATGCTGGCGCTGGTCGACCAGGCGTTGCTGCGGATG
GCCGACGAGCAGGGCCTGGAGATCGAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCTTCCGCCGCCGGTGTCGG
CGATATCCAGGCGCTGCGCGATACCTACCGTGACGCGGTACTTGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCC
AGGCGCGCTTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGGACAGTCAG
TCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGCCTGGCGGA
GCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTCTGA

Protein sequence : 
MDILQSSSAAPLAPREAANAPAQQAGGSFQGERVHYVSVSQSLADAAEELTFAFSERAEKSLAKRRLSDAHARLSEVQAM
LQEYWKRIPDLESQQKLEALIAHLGSGQLSSLAQLSAYLEGFSSEISQRFLALSRARDVLAGRPEARAMLALVDQALLRM
ADEQGLEIELGLRIEPLAAEASAAGVGDIQALRDTYRDAVLDYRGLSAAWQDIQARFAATPLERVVAFLQKALSADLDSQ
SSRLDPVKLERVMSDMHKLRVLGGLAEQVGALWQVLVTGERGHGIRAF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopN AAO18045.1 LopN Virulence TTSS locus Protein 5e-74 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popN NP_250389.1 type III secretion outer membrane protein PopN precursor VFG0193 Protein 2e-111 100
popN NP_250389.1 type III secretion outer membrane protein PopN precursor VFG0389 Protein 8e-50 49