Gene Information

Name : pscT (PA1691)
Accession : NP_250382.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : translocation protein in type III secretion
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 1841514 - 1842302 bp
Length : 789 bp
Strand : -
Note : Product name confidence: class 2 (High similarity to functionally studied protein)

DNA sequence : 
ATGAGCGTCCAGGACCTGCAGCAACTGCTGCTGACCTACAGCCTGCTGCTGCCGCGGATCATCAGTTGCTTCGTGGTCCT
GCCGGTGCTGGCCAAGCAGACCCTGGGCGGCGGCCTGGTGCGCAACGGCGTGGCCTGTTCGCTGGCGCTGTTCGCCTACC
CGATCGTCGCCGGCAGCCTGCCGCCGGCCCTCGGCGCGCTGGACATCGCCCTACTGATCGGCAAGGAAGTGCTGCTCGGC
CTGCTCATCGGCTTCGTCGCCACCATTCCCTTCTGGGCCATGGAAGCGACCGGCTTCATCATCGACAACCAGCGTGGCGC
GGCACTCGCCTCGACCTTCAACCCCAGCCTGGGCAGCCAGACCAGCCCCACCGGGCTGTTGCTGACGCAGACGCTGATCA
CCCTGTTCTTCTCCGGCGGCGCCTTCCTCGCGCTGGTCGGCTCGCTGTTCAGGAGCTATGCCAGTTGGCCGGTGAGCAGT
TTCTTCCCGCAGCTCGGCAGCCAATGGGTGGCCTTCTTCTACGCGCAGTTCTCGCAGATGCTGATGCTCTGCGCGCTGTT
CGCCGCGCCGCTGCTGATCGCCATGTTCCTCGCCGAGTTCGGCCTGGCGCTGGTCAGCCGCTTCGCCCCGTCGCTGAACG
TGTTCATCCTCGCCATGCCGATCAAGAGCCTGGTGGCCAGCCTGCTGCTGGTGCTCTACCTGGGCATCCTCATGGAGCAC
GCCTACGATGCCCTGCTGCTCGCCGTCGACCCGCTGCGCCTGCTGCGTCCCGTGCTGGAGACGCCATGA

Protein sequence : 
MSVQDLQQLLLTYSLLLPRIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPALGALDIALLIGKEVLLG
LLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLFFSGGAFLALVGSLFRSYASWPVSS
FFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMFLAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEH
AYDALLLAVDPLRLLRPVLETP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 2e-59 79

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscT NP_250382.1 translocation protein in type III secretion VFG0186 Protein 7e-69 100
pscT NP_250382.1 translocation protein in type III secretion VFG0396 Protein 1e-54 72