Gene Information

Name : VC0838 (VC0838)
Accession : NP_230486.1
Strain :
Genome accession: NC_002505
Putative virulence/resistance : Virulence
Product : TCP pilus virulence regulatory protein
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 899896 - 900726 bp
Length : 831 bp
Strand : +
Note : similar to SP:P29492 GB:L01623 PID:155285 PID:48418; identified by sequence similarity

DNA sequence : 
ATGATTGGGAAAAAATCTTTTCAAACTAATGTATATAGAATGAGTAAATTTGATACTTACATATTCAATAACTTATATAT
AAACGACTACAAAATGTTCTGGATAGATAGTGGAATTGCAAAGCTTATAGATAAAAATTGCTTGGTTAGTTATGAGATAA
ATTCAAGTTCAATTATCTTACTCAAGAAAAACTCTATTCAGCGATTTTCTTTGACTTCATTATCAGATGAAAATATAAAT
GTTTCTGTAATTACAATAAGTGATTCATTTATACGTTCACTAAAATCTTACATTCTTGGTGATCTCATGATAAGGAATTT
ATATAGTGAAAATAAAGATCTATTACTTTGGAATTGTGAACATAATGATATAGCTGTCCTTTCTGAAGTGGTAAATGGTT
TCAGAGAAATTAATTATTCAGATGAGTTCCTAAAAGTTTTTTTTTCAGGGTTCTTCTCGAAAGTAGAAAAAAAATATAAC
TCTATATTTATTACTGATGATCTTGATGCTATGGAGAAAATTTCATGTTTAGTAAAAAGTGATATTACGCGTAATTGGCG
TTGGGCAGATATTTGTGGTGAATTAAGAACGAATCGGATGATTTTGAAAAAAGAACTAGAGTCTCGAGGAGTAAAGTTTA
GAGAATTAATTAATAGCATTCGAATATCATATTCAATTTCACTAATGAAAACCGGTGAATTCAAAATAAAACAGATTGCA
TATCAGTCTGGGTTTGCTAGCGTTTCATATTTTTCTACAGTATTTAAGTCAACCATGAATGTAGCACCAAGTGAATATTT
ATTTATGTTGACAGGAGTTGCAGAAAAATAA

Protein sequence : 
MIGKKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENIN
VSVITISDSFIRSLKSYILGDLMIRNLYSENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYN
SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIA
YQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGVAEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0838 NP_230486.1 TCP pilus virulence regulatory protein Virulence VPI-1 Protein 7e-116 100
toxT AAK20765.1 TCP pilus virulence regulatory protein Virulence VPI Protein 5e-116 100
tcpN/toxT YP_001216319.1 TCP pilus virulence regulatory protein Virulence VPI-1 Protein 7e-116 100
toxT AAK20795.1 TCP pilus virulence regulatory protein Virulence VPI Protein 5e-116 100
tcpN AAG31790.1 toxin co-regulated pilus virulence regulatory protein Virulence VPI Protein 2e-114 99
tcpN AAG31797.1 toxin co-regulated pilus virulence regulatory protein Virulence VPI Protein 5e-115 99
toxT CAA45465.1 - Virulence VPI Protein 4e-115 99
tcpN AAG31795.1 toxin co-regulated pilus virulence regulatory protein Virulence VPI Protein 1e-99 81
toxT AAK57702.1 toxin co-regulated pilus virulence regulatory protein ToxT Virulence VPI Protein 6e-99 79
tcpN AAG31793.1 toxin co-regulated pilus virulence regulatory protein Virulence VPI Protein 6e-99 79

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0838 NP_230486.1 TCP pilus virulence regulatory protein VFG0101 Protein 3e-116 100