Gene Information

Name : VC0837 (VC0837)
Accession : NP_230485.1
Strain :
Genome accession: NC_002505
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein F
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 898673 - 899689 bp
Length : 1017 bp
Strand : +
Note : similar to SP:P29488 GB:L01623 PID:155281 PID:155284 PID:48417; identified by sequence similarity

DNA sequence :
ATGAGATATAAAAAAACCTTAATGTTATCAATCATGATTACATCATTTAACTCATTTGCATTTAATGATAATTATAGTTC
AACCAGTACGGTTTATGCTACGTCTAATGAAGCTACGGATTCAAGGGGGAGTGAGCACCTTAGATACCCTTATTTAGAGT
GTATCAAAATCGGTATGAGTAGAGATTATCTTGAAAACTGTGTGAAAGTATCTTTTCCAACCTCTCAAGATATGTTTTAT
GACGCATACCCATCGACAGAATCTGACGGTGCTAAGACAAGAACAAAAGAAGATTTCTCTGCTCGGCTTTTAGCTGGTGA
TTATGATAGTTTACAGAAATTGTATATAGATTTTTATCTTGCTCAAACGACTTTCGATTGGGAAATACCGACAAGGGATC
AAATTGAGACACTAGTTAATTATGCTAATGAAGGTAAATTGTCTACGGCACTTAATCAAGAGTATATTACAGGTCGATTT
CTTACAAAAGAAAATGGTCGATATGATATTGTGAATGTTGGTGGTGTTCCAGATAATACTCCAGTTAAACTACCAGCTAT
TGTTTCTAAACGCGGACTAATGGGTACAACTTCTGTAGTTAATGCAATTCCCAATGAAATTTATCCTCATATCAAAGTTT
ATGAAGGGACTCTTAGTCGTTTAAAACCTGGTGGTGCAATGATCGCAGTATTAGAATATGACGTAAGTGAATTAAGTAAG
CACGGGTATACCAATCTGTGGGATGTGCAGTTTAAGGTTCTTGTTGGAGTTCCACATGCAGAAACAGGAGTTATCTATGA
CCCTGTTTATGAAGAAACTGTCAAACCATATCAGCCTAGTGGCAACTTAACGGGTAAGAAGTTGTATAATGTATCTACAA
ATGACATGCATAATGGTTACAAGTGGTCAAATACTATGTTCTCAAATTCTAATTATAAAACGCAAATATTATTAACTAAA
GGAGATGGAAGTGGTGTGAAACTGTATAGCAAAGCATATTCAGAGAACTTTAAATAA

Protein sequence :
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpF AAK20794.1 toxin-coregulated pilus biosynthesis protein F Virulence VPI Protein 5e-156 100
VC0837 NP_230485.1 toxin co-regulated pilus biosynthesis protein F Virulence VPI-1 Protein 7e-156 100
tcpF CAA45464.1 - Virulence VPI Protein 8e-155 99
tcpF AAK20764.1 toxin-coregulated pilus biosynthesis protein F Virulence VPI Protein 1e-155 99
tcpF YP_001216318.1 toxin co-regulated pilus biosynthesis protein F Virulence VPI-1 Protein 2e-155 99
tcpF AAG31796.1 toxin co-regulated pilus biosynthesis protein F Virulence VPI Protein 2e-121 72
tcpF AAG31789.1 toxin co-regulated pilus biosynthesis protein F Virulence VPI Protein 4e-111 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0837 NP_230485.1 toxin co-regulated pilus biosynthesis protein F VFG0100 Protein 3e-156 100