Gene Information

Name : VC0833 (VC0833)
Accession : NP_230481.1
Strain :
Genome accession: NC_002505
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 894855 - 895691 bp
Length : 837 bp
Strand : +
Note : similar to SP:P29491 GB:X64098 PID:48413; identified by sequence similarity

DNA sequence : 
TTGGTTAATGTGATTATGAAGATTAGCAGTTTGAAGAAGGGAAGCAATTTCAGTATTAATATAAAAAATATAAAGCTTGA
TAAAAAATTGTTAGTGGCAATTATTTTTTTAGTTTTATCAATACTGGGAGGTGGAGCCTATTTATACTATGAAAATGAGA
AAACGAAAAAGTTAGAGCAGGCAAGATTACAGAAAATTCAAAAAGAGAACTCTGACAAACAAACCTATTTGTCAGATTTT
AAATCGGCTTTTGAAGGTCTTGATTACCAAGCGCTAACTGGTTTTTATGATGTACTCAGATCTGATATCGATTTTTTCAG
GGTAAATAATTGGTTATTAGATGTAATGGACTGTAATGTTAACTGTAATTTAGCCTTTAAACGAGGAAGCTTTGACACCT
TTACTTATTTAGAAATGAATCGAAATGGAGCTGTTATAAAACCACAGTTCGACCAGAATAAGCTCCAGTTTGCAAATGTG
GATTATATATCTGGTTTTCGTTCTATTTATCTCAAAGATCTCACTGAGCAAGAGAGAGATAAGAGTGAAAATATCATTGA
ACAGTGCTCAACAAAACTTTCTGAACTGTATAATTTGCAGTTGTTAATGAAAGAACAGGTGAAATTTAAAATAAATCTTC
CTAGGAATGTAACTTCAATATCGGGTTATGACTGGGTAAAAAATAGTGACATTAAATTCGGTTCTATTGAAATTGAAAAT
ATGCCAGAGAAAAACTTGGGTCTGATGAAAAATATTATGAATAATAGTATGATGATTACGTCTATCTCTTTGCAAAATTC
AAGTTTTAAATCCAAGTTAAATTATTACTGCTATTAA

Protein sequence : 
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDF
KSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANV
DYISGFRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpD AAK20760.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 4e-115 100
tcpD AAK20790.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 4e-115 100
VC0833 NP_230481.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 2e-117 100
tcpD YP_001216314.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 2e-117 100
tcpD CAA45460.1 - Virulence VPI Protein 7e-115 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0833 NP_230481.1 toxin co-regulated pilus biosynthesis protein D VFG0096 Protein 9e-118 100