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Name : VC1110 (VC1110) Accession : NP_230755.1 Strain : Genome accession: NC_002505 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1179130 - 1180437 bp Length : 1308 bp Strand : + Note : 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA' DNA sequence : ATGCTGGATTCTAAATTACTTCGTACTGAGCTGGACGAAACAGCTGCAAAATTGGCACGTCGCGGTTTTAAACTCGACGT GGAGACTATCCGTACTCTTGAAGAACAACGTAAGTCCATTCAAGTAGAAGTTGAGAATTTACAATCCACGCGTAACTCCA TCTCCAAGCAAATCGGTCAACTGATGGCGTCTGGCGACAAAGCGGGCGCTGAAGCGGTTAAACAACAAATCGGCACTTTG GGTGACGATCTGGATGCGAAAAAAGTGGAATTGGATGCGGTTATGGCGCAATTGGATGCGATCACCCAAACCGTGCCTAA CATTCCAGACGATGCAGTGCCAAACGGTAAAGACGACAGCGAAAACGTAGAAGTTTCTCGTTGGGGAACACCAAAAACTT ATGATTTTGAAGTAAAAGATCACGTGGATTTGGGCGAAATGGGCGACGGTCTGGATTTCGCTAGCGCAACCAAGATCACG GGTGCGCGTTTTGTGGTGATGAAAGGTCAATTTGCTCGTTTGCACCGTGCTATCGCACAGTTCATGTTGGATCTGCACAC CGATCAACACGGTTACACTGAGCTGTATGTACCTTACCTAGTGAACGCGGAAACGCTGTTCGGTACAGGTCAATTACCAA AATTCGGTCAAGATCTATTCCACACTGAGCCTCTGACTGAGAAAGCCAGTGATGAAGAGCCACGCCGTCTGTCACTGATC CCAACCGCAGAAGTGCCAGTGACCAACTTAGTGCGTGACACCATTTTGGATGAAGCTGAACTGCCTCTGAAAATGACCGC ACACACGCCTTGTTTCCGCTCTGAGGCGGGTTCTTATGGTCGTGATACTCGCGGTCTGATCCGTATGCATCAGTTTGATA AAGTGGAACTGGTACAAATCACTCGCCCTGAAGATTCCATGGCGGCATTGGAAGAGTTGACTGGCCATGCAGAAAAAGTT CTGCAACTGCTGGAGCTGCCTTACCGCAAAGTGATTCTGTGTACGGGCGACATGGGCTTTGGCTCGTGCAAAACTTACGA CTTGGAAGTTTGGGTTCCAGCGCAGAAGACGTACCGTGAAATCTCTTCTTGTTCAAACATGTGGGATTTCCAAGCGCGTC GTATGCAAGCGCGTTTCCGCCGCAAAGGTGAGAAGAAACCTGAGTTGGTGCACACGCTGAACGGCTCTGGTCTGGCGGTG GGTCGTACCATGGTCGCGATTTTGGAAAACTACCAAGAAGCCGATGGTCGCATTGCGATCCCTGCGGTACTGCAAAAGTA CATGGGCGGTTTAACCCATATCGGTTAA Protein sequence : MLDSKLLRTELDETAAKLARRGFKLDVETIRTLEEQRKSIQVEVENLQSTRNSISKQIGQLMASGDKAGAEAVKQQIGTL GDDLDAKKVELDAVMAQLDAITQTVPNIPDDAVPNGKDDSENVEVSRWGTPKTYDFEVKDHVDLGEMGDGLDFASATKIT GARFVVMKGQFARLHRAIAQFMLDLHTDQHGYTELYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLI PTAEVPVTNLVRDTILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQITRPEDSMAALEELTGHAEKV LQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYREISSCSNMWDFQARRMQARFRRKGEKKPELVHTLNGSGLAV GRTMVAILENYQEADGRIAIPAVLQKYMGGLTHIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-97 | 54 |
