Gene Information

Name : yscS (CPj0824)
Accession : NP_300881.1
Strain : Chlamydophila pneumoniae J138
Genome accession: NC_002491
Putative virulence/resistance : Virulence
Product : YopS translocation protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 931696 - 931983 bp
Length : 288 bp
Strand : -
Note : -

DNA sequence : 
GTGTTAGCATTTTTCGCAACTAGTTTCAAATCTGTTCTTTTTGAGTACTCCTACCAATCATTATTACTTATTTTGATTGT
TTCGGCACCTCCCATCATCTTAGCTTCCATAGTCGGGATTATGGTTGCGATCTTCCAAGCCGCAACACAAATCCAAGAAC
AGACCTTCGCTTTTGCAGTCAAACTAGTCGTGATTTTTGGAACCTTAATGATCTCTGGAGGGTGGCTTAGCAATATGATT
TTACGCTTTGCAGGTCAGATTTTCCAAAACTTCTATAAATGGAAATAA

Protein sequence : 
MLAFFATSFKSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTLMISGGWLSNMI
LRFAGQIFQNFYKWK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 2e-11 45
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-10 45
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-05 44
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-05 44
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 5e-05 44
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 5e-05 44
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-05 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-10 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscS NP_300881.1 YopS translocation protein VFG2132 Protein 8e-35 89
yscS NP_300881.1 YopS translocation protein VFG0043 Protein 6e-12 44
yscS NP_300881.1 YopS translocation protein VFG0520 Protein 1e-05 44
yscS NP_300881.1 YopS translocation protein VFG0187 Protein 3e-07 42