Gene Information

Name : lcrD (CPj0323)
Accession : NP_300382.1
Strain : Chlamydophila pneumoniae J138
Genome accession: NC_002491
Putative virulence/resistance : Virulence
Product : low calcium response D
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 366953 - 369085 bp
Length : 2133 bp
Strand : +
Note : -

DNA sequence :
ATGAATAAGCTACTCAATTTCGTCAGCAGAACACTTGGTGGCGATACCGCCTTAAACATGATCAATAAGTCCAGCGACTT
AATCCTTGCTCTTTGGATGATGGGCGTTGTCTTAATGATCATTATTCCTTTGCCTCCGCCTATCGTTGACTTGATGATCA
CCATCAACTTATCGATCTCTGTATTCTTATTGATGGTGGCTCTTTATATTCCAAGTGCTTTGCAGCTGTCTGTTTTTCCC
TCGTTGCTCCTCATCACTACGATGTTCCGCTTGGGGATTAATATTTCCTCTTCTCGACAGATTCTCCTTAAAGCGTATGC
GGGTCATGTCATTCAGGCCTTCGGAGACTTCGTGGTTGGAGGGAACTATGTGGTCGGGTTCATTATCTTCCTCATTATTA
CAATCATTCAGTTTATCGTAGTAACTAAGGGTGCCGAGCGTGTTGCCGAAGTTGCTGCCCGATTCCGATTGGATGCGATG
CCAGGTAAACAGATGGCGATTGATGCGGACTTACGAGCTGGTATGATTGATGCCACACAAGCTCGTGATAAAAGGGCTCA
AATCCAAAAGGAAAGTGAACTCTACGGAGCCATGGACGGTGCCATGAAGTTCATCAAAGGAGACGTTATCGCTGGTATCG
TTATCTCTTTGATTAACATTGTTGGCGGTTTGACGATTGGGGTGGCTATGCACGGCATGGACCTCGCTCAAGCAGCTCAC
GTCTACACTCTTCTCTCCATTGGAGATGGTTTAGTCTCTCAAATTCCTTCTCTTTTGATTGCGTTGACAGCGGGTATTGT
CACGACTCGTGTATCGAGTGACAAAAATACGAACTTGGGTAAAGAGATTTCTACTCAGCTCGTTAAAGAACCACGAGCAC
TACTCCTTGCAGGTGCTGCAACTTTAGGGGTTGGTTTCTTCAAGGGCTTCCCTCTATGGTCCTTCTCCATTTTAGCATTA
ATTTTCGTTGCCTTAGGGATTCTCCTACTGACTAAGAAATCAGCGGCAGGAAAAAAAGGTGGTGGCTCAGGAGCTTCAAC
AACCGTAGGGGCTGCTGGTGATGGCGCTGCTACTGTTGGGGATAATCCCGATGACTATTCTCTAACTCTTCCCGTAATTC
TAGAACTTGGAAAAGATCTCTCTAAGCTTATCCAACACAAGACAAAATCAGGACAAAGCTTTGTTGATGATATGATTCCT
AAAATGCGGCAAGCTCTCTATCAGGATATCGGAATCCGATACCCTGGCATTCATGTTCGCACAGATTCCCCTTCTTTAGA
AGGATACGATTATATGATTCTGCTTAATGAAGTCCCTTATGTGCGAGGAAAAATTCCTCCGCACCATGTGTTAACCAATG
AGGTGGAGGACAATCTCAGCCGTTATAATCTACCTTTCATTACCTATAAGAATGCTGCGGGTCTTCCTTCAGCTTGGGTT
AGTGAAGATGCAAAAGCTATTCTAGAGAAGGCAGCAATTAAATATTGGACGCCGCTCGAAGTGATCATTCTCCATCTTTC
GTACTTTTTCCATAAAAGCTCTCAAGAGTTTTTGGGAATTCAAGAGGTACGTTCTATGATCGAATTTATGGAACGTTCAT
TCCCGGACTTAGTGAAGGAAGTCACAAGGCTTATTCCATTGCAAAAGCTTACGGAAATCTTTAAGAGATTGGTTCAAGAG
CAAATCTCAATTAAAGACCTACGTACAATCTTAGAATCTCTGAGCGAGTGGGCGCAAACTGAGAAAGATACAGTTTTGCT
TACAGAATATGTACGGTCTTCTTTAAAGCTTTATATCAGCTTCAAGTTCTCTCAAGGACAATCAGCAATTTCTGTTTATC
TCTTAGATCCAGAAATTGAAGAGATGATTCGTGGAGCAATTAAACAGACATCGGCAGGTTCTTACCTTGCTCTAGATCCT
GATTCTGTGAACCTAATTTTAAAATCTATGAGGAATACGATCACGCCAACACCTGCAGGAGGCCAACCACCAGTATTATT
GACAGCAATTGATGTAAGAAGATATGTACGAAAATTAATAGAAACAGAATTCCCTGACATTGCTGTGATTTCTTATCAAG
AAATCCTACCAGAAATCCGCATCCAGCCTTTAGGAAGAATTCAGATTTTCTAA

Protein sequence :
MNKLLNFVSRTLGGDTALNMINKSSDLILALWMMGVVLMIIIPLPPPIVDLMITINLSISVFLLMVALYIPSALQLSVFP
SLLLITTMFRLGINISSSRQILLKAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM
PGKQMAIDADLRAGMIDATQARDKRAQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAH
VYTLLSIGDGLVSQIPSLLIALTAGIVTTRVSSDKNTNLGKEISTQLVKEPRALLLAGAATLGVGFFKGFPLWSFSILAL
IFVALGILLLTKKSAAGKKGGGSGASTTVGAAGDGAATVGDNPDDYSLTLPVILELGKDLSKLIQHKTKSGQSFVDDMIP
KMRQALYQDIGIRYPGIHVRTDSPSLEGYDYMILLNEVPYVRGKIPPHHVLTNEVEDNLSRYNLPFITYKNAAGLPSAWV
SEDAKAILEKAAIKYWTPLEVIILHLSYFFHKSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQE
QISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP
DSVNLILKSMRNTITPTPAGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLGRIQIF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssD AAO18050.1 LssD Virulence TTSS locus Protein 2e-131 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrD NP_300382.1 low calcium response D VFG2126 Protein 0.0 91
lcrD NP_300382.1 low calcium response D VFG0064 Protein 3e-131 47
lcrD NP_300382.1 low calcium response D VFG0384 Protein 2e-129 46