|
Name : XF0680 (XF0680) Accession : NP_297970.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 650674 - 652092 bp Length : 1419 bp Strand : - Note : similar to GI|6118036 (percent identity: 56 %/query alignment coverage: 96.6 %/subject alignment coverage: 99.1 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : ATGAACCTACGCCCCTACCAACACACCATGGTTGATTTCATCCTGACGCACCCACGCTGCAATCTGTTTGTGCCAATGGG GTTGGGGAAGACGGTAGCCACGCTGACGGCGTTAGATGTGCTTCTGGTGGTCGAAGACATTGCGCCTATTCTGGTGATTG CTCCGCTGCGCGTTGCGGCCACGACATGGCCGGATGAGGTGGCCAAGTTCCCTCATTTGCGCCATCTGCGAGTGTCCGTG GTCGTGGGCAGTGCGGCGGCACGTCGCCACGCCTTGGAGCAGGACGCGGATATCTATTGCATTAATTACGACAATCTAAA ATGGCTGGCGGAGTTTTACGGGGACCGTTGGCCGTTCCGGATGGTGGTCGCCGATGAGTGCTCCAAGCTGAAAGGGTTCC GGCTGCGGCAAGGCACACGGCGCGCCCGCGCACTGGCCAAGCATGTGCATACCAAGGTGGAGCGCTACATTGGGTTGACC GGTACGCCCGCGCCGAATGGGCTACAGGACCTGTGGGCGCTGATGTGGATGGTGGATCGAGGGGCACGGCTGGGGACGCA TTTTAAAGCGTTTATCGATCGCTGGTTCCGTGTGGTGCAGATCGGCAGTGATCCCCATGCGGTGCGCCTTGTGCCCACGC CCAATGCATCGAAAGAGATGCAAGACAAAATACGCGACCTGTGTTTATCCCTTGATCCACAGGCGTACTTTGATTTACGC CAGCCGATTGTCAATACGATTCGCGTTGCGTTGCCAGCGCATGCGCAACGTCTGTACAAGGCCATGGAACAAGAGATGTT CATCGCCTTGGAATGCGGCGCCGAAGTAGAAGCCTTTAACGCGGCCAGCAAGACAATTAAATGCCTGCAACTGGCCAATG GTGCGCTGTATACCGATGACACACGCCAGGCCTGGGAAGTCGTGCACGACGCAAAACTAGAGGCGCTGCACGAGATTATC GAAGAGGCCGCCGGGATGCCGGTGTTGGTGGCGTATCACTTTAAAAGTGATGTAACACGGTTGCAGCGCGCTTTTCCTAA AGGGCGTGTCTTGGACCAACACCCCGACACGATCCGCGATTGGAATGCGGGGAACATTCCCGTGCTATTCGCCCATCCGG CCAGTGCCGGTCACGGCTTAAATCTGCAAGACGGCGGGAACATTCTGGCGTTCTTCGGGCACTGGTGGGACCTGGAGCAG TACCAACAAATCGTCGAACGCATTGGCCCCACACGTCAGGCGCAAGCCGGACATGATCGCCCCGTCTTCATTCACCACAT CGTGGCTGCGAACACGGTGGATGAGCTAGTGATGGCCCGCCGTGAATCCAAACGCGAAGTACAGGACTTGCTGCTAGAGG CGGTGAAACGCAGCGAAACATGTAAACCACTCACATCACAAGGAGTAATAACGTTATGA Protein sequence : MNLRPYQHTMVDFILTHPRCNLFVPMGLGKTVATLTALDVLLVVEDIAPILVIAPLRVAATTWPDEVAKFPHLRHLRVSV VVGSAAARRHALEQDADIYCINYDNLKWLAEFYGDRWPFRMVVADECSKLKGFRLRQGTRRARALAKHVHTKVERYIGLT GTPAPNGLQDLWALMWMVDRGARLGTHFKAFIDRWFRVVQIGSDPHAVRLVPTPNASKEMQDKIRDLCLSLDPQAYFDLR QPIVNTIRVALPAHAQRLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEALHEII EEAAGMPVLVAYHFKSDVTRLQRAFPKGRVLDQHPDTIRDWNAGNIPVLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQ YQQIVERIGPTRQAQAGHDRPVFIHHIVAANTVDELVMARRESKREVQDLLLEAVKRSETCKPLTSQGVITL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SH1779 | YP_253694.1 | hypothetical protein | Not tested | ¥ÕSh1 | Protein | 3e-58 | 41 |
| MW1405 | NP_646222.1 | hypothetical protein | Not tested | ¥ÕSa2 | Protein | 1e-60 | 41 |
| SAOV_0314 | YP_005735831.1 | putative DNA helicase | Not tested | ¥ÕSa1 | Protein | 3e-60 | 41 |
| SAUSA300_1408 | YP_494105.1 | phage helicase | Not tested | ¥ÕSa2 | Protein | 5e-57 | 41 |
