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Name : XF2739 (XF2739) Accession : NP_300016.2 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : type I restriction-modification system endonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2630677 - 2633811 bp Length : 3135 bp Strand : - Note : similar to GI|1075407 (percent identity: 42 %/query alignment coverage: 99.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : ATGGCATTTTTATCAGAAGCCACCTTGGAACAAGCACTGCTGGAACAGCTGCGTGCCCTGGGCTACAGCATCGAGCGTGA AGAAAACATCGGCCCTGATGGCTATCGTCCGGAACGCGCCAGTCACGACGAGGTTGTCCTCAAACAACGCTTCGTTGATG CCGTTGCACGTCTCAACCCAGGGCTGCCACCAGAGGCGAGGCAGGATGCAATCCGTAAGGTCACACAGTCTGAGTTGCCA TCATTACTCGAAGAAAACCGCCGCATCCACAGACTGATCACCGAAGGTGTCGATGTCGAATACTATGCCCAGGACGGTAC CCTGACAGCGGGCAACGTTGCGCTCATCGACTTCGACCACCCGCAACAGAACGATTGGCTGGCCGTGAACCAGTTCGTGG TGATTGCTGATCACTACAACCGGCGTCCTGACGTGGTCCTCTTCGTGAACGGCTTGCCATTGGCCGTGATCGAATTGAAG GCACCAGGAAGTATCAATGCAACCTTGATTGCAGCCTTCAATCAGTTGCAGACCTATAAAGAGCAGATCCCGGCACTGTT CAACACCAACGCCCTGCTAGTGACTTCTGACGGGATGACGGCCCGCTTCGGCGCGCTGTCGGCCGATTTAGAACGCTTCA TGCCTTGGCGCACCACCGACGGCACCGACATTGCTCCAAAAGGGGTGCCGGAACTTGCAACACTGATTGAGGGGATATGC GAGCCGCATCGCCTGCTCGACCTACTGCGCCATTTCACCGTTTTCCGGAAGACGGATGCTGGCTTGGCGAAGATCATCGC CGGTTACCACCAATTCCACGCCGTACGGCAGGCCATCAACAGCACCGTGGCGGCTTCCTCGCCCCAGGGGAATCAACGGA TTGGTGTCATCTGGCACACCCAAGGTTCCGGAAAAAGCCTACTGATGGCTTTCTATGCCGGACAACTGGTCAAACACCCC GCAATGGCCAACCCAACGCTTGTTGTACTCACAGACCGTAACGATCTTGACGATCAGTTATTCACCACATTCTCACAGTG CAGTGATTTAATCCGGCAAACCCCGGTACAGGCCCAGAGCCGCGACCAGGTGCGGAAACTCTTGAACCGTGCATCCGGTG GAGTGATTTTTACCACCTTGCAGAAATTCGGTGACATCACAGAACCACTGACCACACGACGTAATGTCGTCGTCATCGCC GATGAAGCACACCGCAGCCAATATGGCTTCAAAGCCAAAGTGGACACCAAAACCGGCAAAATCTCCTATGGCTTCGCCAA GTACATGCGTGATGCCCTGCCCAACGCATCTTGCATCGGTTTTACCGGCACACCGATTGAGGCCGACGACGTCAATACCC CAGCCGTATTCGGCAACTACATCGACATCTACGACATCAGCCGTGCGGTCGAAGATGGCGCGACCGTGCCGATCTACTAC GAATCGCGGTTGGCACGTATTGCACTGGATGAAGCCGAGAAACCGCAGATTGATGCTGAAGTCAACGCACTGACCGAAGC CGATTCCGAGGCCGAGCAAGAGCGCTTCAAGAAAAAATGGGCAACGGTCGAAACCTTAGTCGGCAGTGATAAACGGCTTG CTTTAATCGCCAAGGACATCATCACCCATTGTGAAGATCGCCTGGCCGCTCTGGATGGGAAGGCGATGGTGGTCTGTATG AGCCGTCGTATCTGTGTCGCCCTATACGATCACATCGTGGCACTGCGGCCCGATTGGCACAGCACCGATCACAAGGCCGG ATCGCTCAAAATCGTCATGACCGGCACGGCCAGTGACCCGCCGCAGTGGCGACAGCATATCGGCAACAAAGCCCGGCGTG ATCTGCTGGCCGAACGTGCCCGTGACCCCAAAGACCCACTCAAACTAGTGATTGTCCGGGATATGTGGCTCACTGGTTTT GACGCCCCCTGCATGCACACCATGTACCTTGACAAACCGATGCAAGGGCATGGATTGATGCAGGCCATTGCACGGGTGAA CCGCGTGTTCCGCGACAAACCCGCCGGATTGATCGTGGACTACATCGGCATCGCACAAAATCTCAGAACGGCCCTGCAAC AGTATTCGAAGAACGATCAGCAACACACCGGTGTTGATGAAGCACAGGCCATCGCACTCATGATGGAGAAATACCAGATC GTCCGGGATATGTACCACGGCTACGATTACCACACCGCAATGAGTGGTACCCCACAAGAGCGCCTTGCCATGATGGGTGG AGCCATTGAGTGGATACTCAATCTTCAGCAGCAACTGGCAGCCATAGCGCAGACCAAAGAAGGCAAAAAAGAGGCCCACC GCCGCTATCAGGATGCCGTGCTAGCGTTGTCTAAGGCGTTCGCCCTGGCATCGGCCTCCGATGAGGCCCGCCACATCCGC GAAGACGTCGGCTTCTTCCAGGCGATCCGTGCCGCCCTCGTCAAGAGCGCCGATCATTCCGGGGGCAGCGAACCGCAACG TGACCTGGCCATCCAGCAGATCGTGAGCCGAGCCGTCGTCTCGACGGAGATCGTCGATATCCTGGCGGCTTCTGGAATCA ACAGCCCAGATATTTCCATCCTGTCCGACGCATTTCTCGCTGAAATTCAGCAGATGCAACGAAAGCACCTCGCCTTAGAA GCCTTGCGCAAGCTGTTGAACGACCGCATTCGTTCCCGCAGCACCGTCAACCTCGTGCAAACCAAGGCCTTCTCCGAGCG CCTGGAAGGTGCTGTGGCGCGCTACCACGCCAACGCGATCACCACTGCCCAGGTGCTCCAGGAACTGATCCAATTGGCCA AAGACATCCGTGCTGCTCGCCAGCGCGGCGAAGCCTCCGGATTGTCTGATGAAGAAGTTGCCTTCTACGACGCACTGGCC GAAAACGAAAGCGCTGTACAGATGATGGGTGATCATACCCTCCGGCTGATCGCTCACGAATTACTCATGCGCCTGCGCGA AAACGTCTCAGTGGATTGGGCCCATCGTGACTCCGCCCGTGCCCGGATGCGTGTCCTAGTGAAGCGCATCCTGCGCAAGT ACGGCTACCCGCCTGATCTACAGAACACGGCTGTGCAGACCGTCCTCCAGCAGGCCGAAGCCTTCTCGTCCCAGTGGAGT GCTTCTGGACCCTAA Protein sequence : MAFLSEATLEQALLEQLRALGYSIEREENIGPDGYRPERASHDEVVLKQRFVDAVARLNPGLPPEARQDAIRKVTQSELP SLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFDHPQQNDWLAVNQFVVIADHYNRRPDVVLFVNGLPLAVIELK APGSINATLIAAFNQLQTYKEQIPALFNTNALLVTSDGMTARFGALSADLERFMPWRTTDGTDIAPKGVPELATLIEGIC EPHRLLDLLRHFTVFRKTDAGLAKIIAGYHQFHAVRQAINSTVAASSPQGNQRIGVIWHTQGSGKSLLMAFYAGQLVKHP AMANPTLVVLTDRNDLDDQLFTTFSQCSDLIRQTPVQAQSRDQVRKLLNRASGGVIFTTLQKFGDITEPLTTRRNVVVIA DEAHRSQYGFKAKVDTKTGKISYGFAKYMRDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISRAVEDGATVPIYY ESRLARIALDEAEKPQIDAEVNALTEADSEAEQERFKKKWATVETLVGSDKRLALIAKDIITHCEDRLAALDGKAMVVCM SRRICVALYDHIVALRPDWHSTDHKAGSLKIVMTGTASDPPQWRQHIGNKARRDLLAERARDPKDPLKLVIVRDMWLTGF DAPCMHTMYLDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLRTALQQYSKNDQQHTGVDEAQAIALMMEKYQI VRDMYHGYDYHTAMSGTPQERLAMMGGAIEWILNLQQQLAAIAQTKEGKKEAHRRYQDAVLALSKAFALASASDEARHIR EDVGFFQAIRAALVKSADHSGGSEPQRDLAIQQIVSRAVVSTEIVDILAASGINSPDISILSDAFLAEIQQMQRKHLALE ALRKLLNDRIRSRSTVNLVQTKAFSERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRGEASGLSDEEVAFYDALA ENESAVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQNTAVQTVLQQAEAFSSQWS ASGP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
