Gene Information

Name : XF2608 (XF2608)
Accession : NP_299885.1
Strain : Xylella fastidiosa 9a5c
Genome accession: NC_002488
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2490561 - 2491223 bp
Length : 663 bp
Strand : -
Note : similar to GI|472403 (percent identity: 44 %/query alignment coverage: 94.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder

DNA sequence : 
ATGACTATTAAGATTTTTCTGATTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGT
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAGGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGCTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTGGCTTTAGGTAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCGCCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCGATTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTGGATGTTCGAGATACTATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAACGATCTGA

Protein sequence : 
MTIKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKTI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 1e-37 42
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 1e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XF2608 NP_299885.1 LuxR family transcriptional regulator VFG1889 Protein 2e-39 43