Gene Information

Name : XF2545 (XF2545)
Accession : NP_299822.1
Strain : Xylella fastidiosa 9a5c
Genome accession: NC_002488
Putative virulence/resistance : Virulence
Product : two-component system, regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2417803 - 2419296 bp
Length : 1494 bp
Strand : -
Note : similar to GI|281546 (percent identity: 58 %/query alignment coverage: 94.4 %/subject alignment coverage: 105.4 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder

DNA sequence : 
TTGGCATCTTCGATGCGTTGCCGTGCGATTGAAGACGATGGGAATTGTCCATCTTCAGTCTGCTGCGTTATCTTGGCATT
CATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTA
TGGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATC
ACCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGC
CATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTG
TTGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAG
CCACAAAGCCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCG
TAGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTG
TCCGTGCTGCTGGGGCGTTCGTGCCGGTTAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCAC
AAGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGA
TGAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTG
CAACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGC
TTCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCC
GCATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGG
AGGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAA
GATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCC
CACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATA
TGGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTT
GGCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Protein sequence : 
MASSMRCRAIEDDGNCPSSVCCVILAFMNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCI
TDMRLPDGSGIELVNKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQ
PQSPSQRLLGESLPMAQLRATIAKVARSQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGH
KKGSFTGAHTDKPGLFQSAGGGTLFLDEVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGR
FRHDLYYRINVIEIRVPPLRERAGDLPHLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTE
DDHIGVADLHLPQGSLHGQGLPLPLVPTVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKL
GITFRALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-101 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-101 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XF2545 NP_299822.1 two-component system, regulatory protein BAC0089 Protein 1e-74 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XF2545 NP_299822.1 two-component system, regulatory protein VFG1214 Protein 3e-125 59
XF2545 NP_299822.1 two-component system, regulatory protein VFG0116 Protein 5e-59 41