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Name : XF2409 (XF2409) Accession : NP_299688.2 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1112 EC number : - Position : 2285562 - 2289128 bp Length : 3567 bp Strand : + Note : similar to SP|P39369 (percent identity: 47 %/query alignment coverage: 96.8 %/subject alignment coverage: 99.4 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder/Start codon shift: 2523 DNA sequence : ATGCAAGCACGTTCTTCTGCTTACGCACGCTATTGGCGCCATTCACTGGCTGACAGTGGAACAGACCGTGGTGTACTTCG TGATGCTGCTGACACTTCATTCTTGGAGGTGTCCAAGCAGCAATTAGAAAGCGGCTGTGTGGACCGCAACATTGTCGCGG CCTGTTTCAATAAAGAAGGCGAACAGGTCCAAACGGTCGAAGTGGTGATCCGCCTCAAGGTCTATGTGCTGCTGCTACAA CACGGCACGCCGCAGCGCGCGGGAAACCCCAAGATCGTCACGCCGCTGGTGACACAGGCGTTATTGGGGCGGGATGGCAG GATCTATCCGTTGGCGAAGACGATGATCTGTCGTGACATTTTGGAGCCTTTGGCAGGGGGACATTTCGCGATTGGCACGG TGGCGGATCAGGATGCGTTTCTGACAAGGCAGCCAGTGCCTGGCATTGCTTTTACGGGGACAGAAAATAATGGGGACTCA TTGGAGGAGTCCAACAATGCCGACTTTGATCGGCAATGGAAGGAGTTTCTAGCGGGTTGTGATCGGCTATTAGCGGAGGT CGGTGGTGCCTGGCCCGGCGCTCAGGGGGATTATCTGGAGGCCGACTATGGGTATCTCACCAAGAAAGCAGCGTTCTCCA GCCGACATATCCTGGCTTTATACGACCATCTTTTGCTCGAAACAACGCCACAGGTGCCGTTGTTTGAGCGCTATGCCAGC GGTGAGATGGCGCCGCCGGAACCGTGTTTGCCGCCGCATGCCGGGTTCTCACAACGGCTGGCGCATGGCAACAATGAGCA TCCTTTGACCCGGACGCAACGCGATGCGCTAACGCATCTGCTGGTAGCTCGACAAGGGGAAATTCTTGCGGTGAATGGCC CGCCGGGCACTGGAAAAACCACGCTGGTGTTATCGGTGGTGGCGTCGTTATGGGCGCATGCGGCGCTGGCAGGGGGGGAG CCGCCGGTCATTGTCGCTGCGTCGACCACGAATCAGGCGGTGACCAATATCATTGATGCGTTTGGGAAGAATTTTGCAAA GGGAGAAGGTCCTTTTGCGGGGCGTTGGCTACCCAAAATTAATAGTTTCGGCGCGTTATTAGGCTCGGACGACAAAAAGA AAAAGACGGCAGACAAATACCACACCGAGGATTTTTTTAATGCGGTGGAATCAGCCGGCTACATCGCTGAGGCAGAACAG CATTATTTGCGTGCGGCGGCGGCGGCATTTCCAGAGATCCCGCAGGCGTCGTTCAATGTCAAGAGTGTCACCGCGGCATT GCTGGGGAAGATTCGGAAGGAGGCGGCAACACTGGCCGACATTGAGCAGGCGTGGTCAGGCTTGAATGATGCGCGTGATG CGCTGCGGGCCGAGTTGGGGGAGAGGCCCGCTACGACGATGACGCAACGCCGCACCCAACGGGACGCAGCGCAGGCGGAG AAGCAGGTCATTGAAACGCTCATCACCCAGTGGGAGCGCTATGCTGCGGACGAGTCGCTGGTGTATGGGTTGTTTTCTTG GCTGCCTGCGGTGGCCAAAAAGCGGATGCGGTTGATCCGTGTGTTTTTGAACTCCATCTGGCCAGTGGATTACCCAACAC AGACGTGGGAGAGCATTGAGCAGGTTGATGGGTGGCTCAGCGAGATACAGCGCCAATGTGATCACAGGCTTCAGGAGCAC TCCTGCGCTGTGACACGCGGTGAAGCGGTGCTGGATGCGGAGCAGTGCCACATCACCACATGGCAGAAGGCGTTAGCACC TCTAGAGCTGACGGAGGCGGAGGCGGCAGGCCAGGTGTCTCTTGCGGACTGTGATGCACACGCCGATACATCCATCCGCT TTCGGATCTTTCTGCTAACCACGCACTATTGGGAGGGGCGTTGGTTGTCGGAGATGCAGGCCCAGTTGCCAGGGGATCTG GATGCGGAGAAGAAAAAGACGGGGCGTACCGCCGTGGAACCGCGCTGGCGGCGACGGATGAAATTAACGCCGTGTATTGT GTCGACGTTTTTCATGCTGCCCAAAAAGATGCAGGTTTTCAGGAGTGATGAGAAAAGCTTCAGCCCTCACTACCTCTATG ACTTTGCGGATTTGCTGATTGTTGACGAGGCGGGCCAGGTGCTTCCTGAAGTAGCTGGTGCGTCATTTGCACTGGGCAAG CAAGCTTTGGTGATTGGGGACCAGCTGCAGATTGAACCGATTTGGTCGATTCCGAAAAGCATTGATATTGGTAACCTGCA GGCTGCTGAGCTGCTGGGGAAGGAGGAGGATGCCTACGAGCGGGTTTGTGAGTCTGGAAGATCCGCGGCGTCAGGCAGAG TGATGCAGATCGCACAACGGCTGAGCCGGTATCACTATGACCCTGCGATGGCACGCGGCATGTTTCTGCATGAGCACCAT CGCTGCTTTGATGAGATTGTCAGTTACTGCAATGCGCTGTGCTATCAAGGCAAACTCATCCCCCAACGCGGACCCAAGGT GGCAGCGCTGAAGAATGCAGAAGGAAAGGAAACAGGAGACAGTTTGCCGGCGCTGGGATATCTGCACGTCGATGGTCTCT GCCAGAAAAGTAGCGGCGGCAGTCGATATAACCTCTATGAGGCGGAAACCATTGCGGCGTGGCTTGCCGAGCACCACGAG TCGCTGCAAGCACAGTATGGGGAGCCGCTGCATCGCATTGTGGGCATCCTCACGCCGTTTGAGACGCAGGCGCGTGCAAT TTCACAAGCCTGCCGTGACGTGGGAATTGAGGTGGGCCACGAAAAGGATGGGATCACGGTTGGGACGGTGCATGCGCTGC AAGGGGCGGAACGGCCTGTGGTGATCTTTTCTGCGGTGTATAGCAAGCATGCCGATGGCGGTTTTATCGACCAGCGCGCA AGCATGTTGAATGTGGCGGTATCGCGTGCCAAAAACACTTTTTTAGTGTTTGGGGATATGGATGTCTTCACGGCGGCACC AAAGAGCAGGCCGCGTGGCCTGTTGGCGCATTATCTTTTCAAAGATCCAAGCAACGCGCTGTGTTTTCAACCGTTAGTCC GCAAAGATCTGCAACAGGTCAGTACAGCGGTGGAGGTACTGCAGGACGCCGCCGAACATGACGCTTTTTTATTGCAGGCG CTCAACAAGGTGCAGCGTGAAATCCATATTGTGAGTCCCTGGATCAACAAAGATCGCATTCAAGACATCGGTGCCTTCAA AGCAATGCAGGAGGCGGTGGAGCGTCAGGTGCAGGTCACGGTCTACACGGATCAGGATTTGAACACCGACGATAAGAAAG ACACAAAGAAGATCGCTGAAGTGCTGCAAGCCGCCAGGGCGTTGCGCGGTGTGGGGATTGAGGTGCATTTTGTCGACAGA GTCCACAGCAAAATGGTGATTGGGGACGATGAGGTGTTTTGTGTTGGGTCGTTCAATTGGTTCAGTGCCAACAGAAGCGC AATGTACGCCAAGCATGAAACGTCATTGGTTTATCGTGGTCGCGGGCTTGCAGATGAGAGGCAAACCAGGCTGAACAGTT TACGGCAGCGAATCACGGATGATCCTCAGCAAGTCGGCCAGGCGTGA Protein sequence : MQARSSAYARYWRHSLADSGTDRGVLRDAADTSFLEVSKQQLESGCVDRNIVAACFNKEGEQVQTVEVVIRLKVYVLLLQ HGTPQRAGNPKIVTPLVTQALLGRDGRIYPLAKTMICRDILEPLAGGHFAIGTVADQDAFLTRQPVPGIAFTGTENNGDS LEESNNADFDRQWKEFLAGCDRLLAEVGGAWPGAQGDYLEADYGYLTKKAAFSSRHILALYDHLLLETTPQVPLFERYAS GEMAPPEPCLPPHAGFSQRLAHGNNEHPLTRTQRDALTHLLVARQGEILAVNGPPGTGKTTLVLSVVASLWAHAALAGGE PPVIVAASTTNQAVTNIIDAFGKNFAKGEGPFAGRWLPKINSFGALLGSDDKKKKTADKYHTEDFFNAVESAGYIAEAEQ HYLRAAAAAFPEIPQASFNVKSVTAALLGKIRKEAATLADIEQAWSGLNDARDALRAELGERPATTMTQRRTQRDAAQAE KQVIETLITQWERYAADESLVYGLFSWLPAVAKKRMRLIRVFLNSIWPVDYPTQTWESIEQVDGWLSEIQRQCDHRLQEH SCAVTRGEAVLDAEQCHITTWQKALAPLELTEAEAAGQVSLADCDAHADTSIRFRIFLLTTHYWEGRWLSEMQAQLPGDL DAEKKKTGRTAVEPRWRRRMKLTPCIVSTFFMLPKKMQVFRSDEKSFSPHYLYDFADLLIVDEAGQVLPEVAGASFALGK QALVIGDQLQIEPIWSIPKSIDIGNLQAAELLGKEEDAYERVCESGRSAASGRVMQIAQRLSRYHYDPAMARGMFLHEHH RCFDEIVSYCNALCYQGKLIPQRGPKVAALKNAEGKETGDSLPALGYLHVDGLCQKSSGGSRYNLYEAETIAAWLAEHHE SLQAQYGEPLHRIVGILTPFETQARAISQACRDVGIEVGHEKDGITVGTVHALQGAERPVVIFSAVYSKHADGGFIDQRA SMLNVAVSRAKNTFLVFGDMDVFTAAPKSRPRGLLAHYLFKDPSNALCFQPLVRKDLQQVSTAVEVLQDAAEHDAFLLQA LNKVQREIHIVSPWINKDRIQDIGAFKAMQEAVERQVQVTVYTDQDLNTDDKKDTKKIAEVLQAARALRGVGIEVHFVDR VHSKMVIGDDEVFCVGSFNWFSANRSAMYAKHETSLVYRGRGLADERQTRLNSLRQRITDDPQQVGQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF_2 | AAZ04413.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 47 |
| APECO1_3532 | YP_854230.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 47 |
| S3169 | NP_838460.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 46 |
| SF2965 | NP_708739.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 46 |
| unnamed | CAD42018.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XF2409 | NP_299688.2 | hypothetical protein | VFG0627 | Protein | 0.0 | 46 |
| XF2409 | NP_299688.2 | hypothetical protein | VFG1537 | Protein | 0.0 | 45 |
