Gene Information

Name : XF2279 (XF2279)
Accession : NP_299558.1
Strain : Xylella fastidiosa 9a5c
Genome accession: NC_002488
Putative virulence/resistance : Virulence
Product : nucleotide sugar epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 2169609 - 2170637 bp
Length : 1029 bp
Strand : -
Note : similar to GI|5739472 (percent identity: 51 %/query alignment coverage: 97.7 %/subject alignment coverage: 100.0 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder

DNA sequence : 
ATGTATCGCCGCTGGTTGTATGGATGTGCGGGTCTGTGGTTTCTGTGGAGGCTCCCGATGACGGTGCTAGTCACAGGTGC
GGCCGGCTTCATCGGCGCTCATGTGTGTCGCGCACTGGCCGCGCGCAACGATACCGTGGTTGGGTTAGATAACTACAATG
CCTACTACGATCCGCAACTGAAGCGCGACCGCGTGACAGCGCTGTGTCCGGATGTTCACATTCGAACGCTTGACTTGACT
GACCGTGAGAGATGCGCGGCTCTTTTTAACGAGGTCCAGCCTGATCAGGTGGTGCATCTGGCGGCGCAGGCGGGGGTACG
CTACTCCATTGAAAACCCACATGCCTACGTAGATAGCAATCTTGTCGGTTTTCTCAATGTATTGGAGCTGTGTCGTCATT
GCCGTGTGCAGCACCTGGTGTACGCTTCGAGCAGTTCAGTGTATGGGGACTCAGCGACTCCGCCGTTCTCGGAGCAGCAG
CGCGTGGACCAGCCACGCTCTCTGTATGGGGCAACGAAGGTTGCTAACGAAGTGATGGCTTATAGCTACGCTCAGCTCTA
TGGATTGCGTGCGACTGGCCTGCGTTTTTTTACTGTCTACGGTCCCTGGGGGCGGCCGGACATGGCGCCGCTGATCTTTA
GCCGCGCTGTACTGGAAGGGCGGCCTATTGAAGTATTCAACCATGGCCGCATGGAGCGTGACTTCACCTTTATCAATGAT
ATTGTGGCTGGTGTCATTGGTGCGCTTGATGCTCCGGGTGAACAGGCGGTGCCGCATCGCTTATTCAACTTAGGTAACCA
TACCCCCGTGCCGCTTGAGCATTTCATCAATGTGATTGAGCAGGCTGCTGGCCGTCCTGCCGATAAGCATTACAAACCAA
TGCAACTGGGTGACATGATGGCCACAATGGCAGATATTGCAGCGGCACGCGCTGCGTTTGGATTTGAACCAGTCACATCC
ATTGAGATCGGTATGCCGCAAGTGGTGGAGTGGTGCCGTCACTACTTTGATGTGCGTGCCGCAACGTAA

Protein sequence : 
MYRRWLYGCAGLWFLWRLPMTVLVTGAAGFIGAHVCRALAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDVHIRTLDLT
DRERCAALFNEVQPDQVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQHLVYASSSSVYGDSATPPFSEQQ
RVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFTVYGPWGRPDMAPLIFSRAVLEGRPIEVFNHGRMERDFTFIND
IVAGVIGALDAPGEQAVPHRLFNLGNHTPVPLEHFINVIEQAAGRPADKHYKPMQLGDMMATMADIAAARAAFGFEPVTS
IEIGMPQVVEWCRHYFDVRAAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1I AAA64648.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 8e-70 45