Gene Information

Name : XF1848 (XF1848)
Accession : NP_299134.1
Strain : Xylella fastidiosa 9a5c
Genome accession: NC_002488
Putative virulence/resistance : Virulence
Product : two-component system, regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1762190 - 1763617 bp
Length : 1428 bp
Strand : -
Note : similar to SP|P06713 (percent identity: 51 %/query alignment coverage: 96.8 %/subject alignment coverage: 98.1 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder

DNA sequence : 
ATGGTTGAGATTGATGCGACTTCCCCACGCATCTGGGTGGTTGACGACGATCGCTCGGTACGCTTCGTGTTGTCTACTGC
ACTGCGTGATGCAGGCTATATCGTGGAAGGTTTTGAGAGTACTTGCGCAGCGTTGCAAGCCCTGGCAGCCTCCCCAATCC
CAGACTTATTGTTCACCGACGTACGCATGCCTGGTGATGATGGTTTGATTTTGCTGGACAAGCTCAAAGCACGCCATCCG
CACCTTCCAGTAATTGTTATGTCTGCCTACACCGATGTGGCTAGCACTGCCGGTGCATTTCGCAGTGGTGCACATGAATT
CTTGTCCAAGCCCTTTGATCTAGACGATGCGGTTGCGTTGGCAGCTCGTGTGTTACCACATACAGAAGGATCTCATGGGG
GACCACCCATATTGCCTGCTGCCAACAGTAATCCCGTCTTGATCGGCAGCACTCCGGTGATGCGCGCTTTGTTCCGTGCA
ATCGGACGGTTGGCGCAGGCACCACTCTCGGTACTGATTAACGGTGAAACAGGCACCGGCAAGGAGCTCGTTGCACGTGC
GTTACACAACGAATCTCCGCGTGCGCAGGCGCCGTTCGTTGCGCTGAATGCTGCGGCGATTCCAACCGAGCTTTTGGAGA
GCGAGTTGTTCGGTCACGAGGCCGGCGCGTTTACAGGAGCGACCAAACGTCATATTGGCCGCTTTGAGCAAGCCGATGGC
GGCACTTTATTTTTGGATGAAATCGGCGATATGCCATTGTCTTTGCAGACGAGACTGTTACGTGTACTGGCTGAAAATGA
ATTCTTCCGGGTCGGGGGCCGCGAACTGATCCGTGTCAATGTCCGTGTGATTACTGCGACCCATCAGGATCTTGATATGT
TGGTCGAGCAGGGTCGTTTTCGTTCCGATCTCTTGCACCGTTTGGATGTGGTGCGCTTGCAACTGCCATCATTACGTGAG
CGGCGTGATGACGTGGCACAGTTGGCCGAGAATTTTTTGGCGATGGCTGGACACAAGCTGGATATCTCAGTTAAACGTTT
GTCTGCCGATGCGCTAGAGATACTGCGTCGCTACGATTGGCCAGGTAATGTCCGTGAGCTGGAAAATATTTGTTGGCGAT
TAGCTGCTTTGGTGAACACTGAGACAATTGATGCCAATGATGTTGAAGCTGTGTTAACGCATGGCAAGCGCAAGCGTTGT
AACACTGAAAGCGATTGGGATATCCATTTGGCCAAATGGGCGGAAGGCCGCTTAGCGGCAGGCGCAACTGCTGTGCATGC
CGAGGCTCGCAAATGTTTGGACCGAACGCTACTGGATGTGGCATTGCGTTTGACGCAGGGCCGTCGTGCCGAAGCAGCTG
CACGTCTTGGTCTGGGTCGTAACACGTTGACCCGCAAGCTTGGCTCAAGTCAACGTCGTAGGGGGTAA

Protein sequence : 
MVEIDATSPRIWVVDDDRSVRFVLSTALRDAGYIVEGFESTCAALQALAASPIPDLLFTDVRMPGDDGLILLDKLKARHP
HLPVIVMSAYTDVASTAGAFRSGAHEFLSKPFDLDDAVALAARVLPHTEGSHGGPPILPAANSNPVLIGSTPVMRALFRA
IGRLAQAPLSVLINGETGTGKELVARALHNESPRAQAPFVALNAAAIPTELLESELFGHEAGAFTGATKRHIGRFEQADG
GTLFLDEIGDMPLSLQTRLLRVLAENEFFRVGGRELIRVNVRVITATHQDLDMLVEQGRFRSDLLHRLDVVRLQLPSLRE
RRDDVAQLAENFLAMAGHKLDISVKRLSADALEILRRYDWPGNVRELENICWRLAALVNTETIDANDVEAVLTHGKRKRC
NTESDWDIHLAKWAEGRLAAGATAVHAEARKCLDRTLLDVALRLTQGRRAEAAARLGLGRNTLTRKLGSSQRRRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-48 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XF1848 NP_299134.1 two-component system, regulatory protein BAC0467 Protein 7e-69 46
XF1848 NP_299134.1 two-component system, regulatory protein BAC0089 Protein 1e-63 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XF1848 NP_299134.1 two-component system, regulatory protein VFG1249 Protein 3e-60 43
XF1848 NP_299134.1 two-component system, regulatory protein VFG1214 Protein 3e-59 41