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Name : XF1842 (XF1842) Accession : NP_299128.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Virulence Product : glutamine synthetase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0174 EC number : - Position : 1757590 - 1759104 bp Length : 1515 bp Strand : + Note : similar to SP|P06711 (percent identity: 64 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.8 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : ATGCTTACCCGAAAAAAATCAATGGATTGCAAGGTTGGCAGACTTGGTATGCCAATTGCTTTAGCTGTTTCTGACTGTTA CCCCAATCCTAAAAGGTTTCCTCTGATGTCGCTGGAAAATGTTGAAAAGCTTGTCAAGGATAAAAAGATCGAATTCGTCG ATTTGCGCTTTGTTGATATGCGCGGCGTGCAACAGCACGTCACCTTTCCGGTGAACATTCTTGAACCATCGCTGTTCAAG GATGGAAAGATGTTCGACGGTAGCTCGATTGCCGGTTGGAAGGGGATCAATGAGTCGGACATGGTACTGCTGCCTGACGC TAACACCGCCTATCTGGATCCTTTTTACGCTGATCCAACGCTGGTCATGACATGCGACATCCTCGATCCAGCGACGATGC AGAGTTATGTGCGTGATCCCCGAGGCATCGCCAAACGTGCCGAAATCTACTTAAATTCTTTGGGTATTGCTGACCAAGCA TTTTTCGGTCCGGAACCTGAATTTTTTATCTTCGATTCAGTCCGTTTTGCTAATGATATGGGTCATGCTTTTTTCCAAAT TGCTTCCGAAGAGGCTGCCTGGAACACAGGCGCTGAGTTTGAGGGAGGTAACGGTGGTTACCGCCCGGCGGTAAAGGGTG GATACTTCCCAGTTCCACCGACTGACTCGCTGCACGATTTGCGTGCCGAGATGGTGAAGACCCTGGAGCAGGTTGGTATT GAGACCGAGGTGCATCATCACGAAGTCGCCACTGCTGGACAATGTGAGATCGGCACTAAGTTCAACTCATTGGTCAAAAA GGCTGATCAGCTGATGACGATGAAATACATCCTTAAAAACGTTGCTTACCGCAATGGAAAGACTGTCACCTTTATGCCTA AGCCGATGGTTGGTGATAACGGTTCTGGCATGCATGTGCATCAGTCGCTCTCTAAAGGAGGGGTCAACTTGTTCTCCGGT GACGACCATGCTGGTTTGTCGCAGCTTGCACTGTATTACATCGGCGGTATTTTCAAGCATGCTCATGCGATCAACGCGTT TTCCAATTCGGGCACAAATAGCTATAAGCGTTTGGTTCCGGGCTTCGAAGCACCCGTGATGTTGGCTTATTCGGCACGTA ACCGCTCGGCCTCGTGCCGTATTCCATGGGTTTCTAGCCCGAAGGCACGCCGCATTGAAATGCGTTTCCCCGATCCATTG CAGTCTGGTTACCTCACCTTTACTGCGCTGATGATGGCTGGGCTGGATGGCATTAAAAACAAGATCCATCCAGGCCCACC CAATGACAAAGATCTGTATCACCTGCCGCCTGAAGAGGAAAAATTGATCCCGCAGGTTTGTTCAAGTTTGGATCAGGCTC TTGAAGCATTGGACAAAGACCGCGATTTCTTGAAGGCAGGGGGTGTGATGAGTGACGATTTTATTGACGGCTATATTGCG CTGAAGATGCAGGAAGTGACGCAGTTCCGCGCGGCCACACATCCGCTGGAATACCAGATGTACTACGCCAACTAA Protein sequence : MLTRKKSMDCKVGRLGMPIALAVSDCYPNPKRFPLMSLENVEKLVKDKKIEFVDLRFVDMRGVQQHVTFPVNILEPSLFK DGKMFDGSSIAGWKGINESDMVLLPDANTAYLDPFYADPTLVMTCDILDPATMQSYVRDPRGIAKRAEIYLNSLGIADQA FFGPEPEFFIFDSVRFANDMGHAFFQIASEEAAWNTGAEFEGGNGGYRPAVKGGYFPVPPTDSLHDLRAEMVKTLEQVGI ETEVHHHEVATAGQCEIGTKFNSLVKKADQLMTMKYILKNVAYRNGKTVTFMPKPMVGDNGSGMHVHQSLSKGGVNLFSG DDHAGLSQLALYYIGGIFKHAHAINAFSNSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSSPKARRIEMRFPDPL QSGYLTFTALMMAGLDGIKNKIHPGPPNDKDLYHLPPEEEKLIPQVCSSLDQALEALDKDRDFLKAGGVMSDDFIDGYIA LKMQEVTQFRAATHPLEYQMYYAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glnA | YP_003728749.1 | glutamine synthetase | Not tested | cag PAI | Protein | 1e-104 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XF1842 | NP_299128.1 | glutamine synthetase | VFG1399 | Protein | 9e-108 | 51 |
