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Name : XF1776 (XF1776) Accession : NP_299064.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : DNA topoisomerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 1694565 - 1696424 bp Length : 1860 bp Strand : - Note : catalyzes the ATP-dependent breakage of signle-stranded DNA followed by passage and rejoining, maintains net negative superhelicity DNA sequence : ATGACGCGGCGCTCAAGCGCTGGTCGCTGGAGCAGTTGCCCATTGTTCCGCAGCAGTGGCGGGTCGAGGTCAAACCGAAG ACCGCCACGCAATTCTAAGGTCGTCAAGGCGCTTCTGGCGAAGGCGACCCATCTGGTCATCGCCACCGATGCCGACCGTG AGGGCGAGCTGATCGCCCGCGAGATCATCGACCTGTGCGGCTACCGCGGCCCCATCGAGCGGCTATGGCTGTCGGCGCTC AACGATGCGTCGATCCGCACCGCGCTCGGCAAGTTGCGGCCCTCATCCGACACGCTGCCGATGTACTACTCGGCGCTTGC GCGCTCACGCGCCGACTGGCTCGTGGGCATGAACCTCAGCCGGTTGTTCACGGTGCTCGGGCTTCAGGCCGGCTACGACG GCGTGCTGTCCGTCGGTCGCGTCCAGACGCCGACCTTGAAGCTCGTCGTGGACCGCGACCGCGAGATCGCGGCCTTCAAG TCGGTGCCGTTCTGGGCCATCGACGTGTCCCTGTCCGCGGGCGGTCAGGCTTTCAGCGCGCAGTGGGTTCCGCCAGATGG CTGCACCGACGATGCCGGCCGCTGCCTGCAGCAGCCTATCGCCCAGCAGGCCGCGCAGCAGATCCGCGCTGCGAGCAGCG CCCAGGTCGTGTCAGTCGAGACCGAGCGCGTGCGCGAAGGGCCACCGCTGCTGTTCGACCTGGGAACGCTTCAGGAGGTT TGTTCCAAGCAGCTTGGGCTGGATGTGCAGGAGACGCTGGAGATCGCCCAGGCCCTCTATGAGACCCATAAAGCCACCAC GTACCCGCGTTCCGATTCGGGCTACCTGCCCGAAAGCATGTTCGCCGAGGTGCCGACTGTTCTGGACAGCCTGCTCAAGA CCGACCCCTCGCTGCGCCCGATCATGGGCCAGCTCGACCGCTCCCAGCGCTCGCGCGCCTGGAACGACGGCAAAGTGACG GCGCACCACGGCATCATTCCCACCTTGGAACCCGCGAACCTCTCGGCGATGAGCGAGAAGGAACTGGCGGTGTACCGGCT GATCCGCGCGCACTACCTGGCGCAGTTCCTCCCTCACCACGAGTTCGACCGCACGATCGCCGAGCTGTCCTGCGGCCAGC AGAAGCTGGTGGCCACCGGAAAGCAGGTGGCCGCCCAGGGTTGGCACCTGGTGCTGGCCGAGCCGCAAGCGGACGAGGAC GGGGAAACCACCGCGCGCAGCCAGGTACTCCCCGCGCTGCGCGAGGGCCTGGCATGCCAAGTGGCCGAGGCCGAAGTCAA GGCGCTCAAGACGCTGCCTCCGAAGCCCTATACCCAGGGCGAACTGGTCAAGTCGATGAAAGGCGTGGCGCGCTTCGTGA CCGACCCGCGCCTGAAGCAGAAGTTGAAGGACACGACGGGCATTGGCACCGAAGCCACGCGCGCCAACATCATCACCGGC CTGCTGACGCGGGGCTATCTCGTGAAGAAAGGACGCTCCATTCGCGCATCGGATGCGGCATTCACGTTGATCGACGCTGT GCCCGCGGCGATTGCCGACCCCGGAACCACCGCCGTGTGGGAGCAGGCGCTCGACATGATCGAGGCCGGACAGCTCACCC TGGATGTGTTCATCGGCAAGCAGGCCGCATGGATTTCGCAACTGATCGTGCAGTACGGCAGCACCTCGCTGTCCATCAAG GTTCCCCAGGGTCCCGCTTGCCCGCAGTGCGGCGCACCGACGCGCCAGCGCACCGGCAAGACCGGCCCCTTCTGGTCGTG CAGTCGCTACCCCGACTGCAAAGGCACGCTGCCGGTCGATTCCGGCACGTCCAAGCGCGGTGCCTCGCGCCCGCGCAGTA GCGGCCGCAAGGGCTCCTGA Protein sequence : MTRRSSAGRWSSCPLFRSSGGSRSNRRPPRNSKVVKALLAKATHLVIATDADREGELIAREIIDLCGYRGPIERLWLSAL NDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTVLGLQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFK SVPFWAIDVSLSAGGQAFSAQWVPPDGCTDDAGRCLQQPIAQQAAQQIRAASSAQVVSVETERVREGPPLLFDLGTLQEV CSKQLGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRPIMGQLDRSQRSRAWNDGKVT AHHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDRTIAELSCGQQKLVATGKQVAAQGWHLVLAEPQADED GETTARSQVLPALREGLACQVAEAEVKALKTLPPKPYTQGELVKSMKGVARFVTDPRLKQKLKDTTGIGTEATRANIITG LLTRGYLVKKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLIVQYGSTSLSIK VPQGPACPQCGAPTRQRTGKTGPFWSCSRYPDCKGTLPVDSGTSKRGASRPRSSGRKGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 89 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 77 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 5e-143 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-143 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-139 | 48 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-139 | 48 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-139 | 48 |
