|
Name : XF1718 (XF1718) Accession : NP_299007.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : phage-related integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 1638946 - 1640907 bp Length : 1962 bp Strand : + Note : similar to GI|3059142 (percent identity: 91 %/query alignment coverage: 93.9 %/subject alignment coverage: 93.3 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : ATGGCACTCTCTGATCTGACAGTCCGGCAGGCAAGAACCACCGGCAAGCGCTACACCCTCTCCGATAACGACTGCCTGGG CCTGATGGTCTCTGCCGCAGGCGGCAAGTCGTGGATCTTCCGCTACTACTGGCTGGGCAAGCAAAAGCGCATGTCCCTGG GCGGCTATCCCGCCCTCAGTCTGCGCGAGGCCCGCGCCGAGCGGGACAAGGCCCAAGCCCTGCTCGCCAGGGGGATCGAT CCCCAAATCGAACGCGACCAGCGCCGGCACGCGGCCAAGCTGGCGGGCGAATACACCTTCAAGAACGTCTTCGATGCCTG GGTCGAGCATCGCCGCAAGGAACTCAAGGAAGGCCGCCAGAGCACGCTGTCGCAGATCCTGCGCATTTTCAACAAGGACG TGCTGCCTACTCTGGGGAAGATGTCGATCTACGACATTCGTCGCCCCCAACTCGTGGGCGTCGTGGCGGCAATCGAGAAG CGCAAGGCGTTCACCACCGCCGAGAAAGTCCGCACCTGGTTCAACCAGATGTTCCGATATGCCCTGGTCATCGCCGAGGG GCTGGAAGTCAACCCGGCCGCGGACCTGGACGTGGTGGCTGAGCCCAAGCCCCCGGTGGCTCACAACCCCTACTTGCACC TGCCCGAGCTGCCCGAGTTCCTTCAGAAGCTCCGGCTCTACAACCCCCGCGGCTGGCAGACCCAGCTTGGCATCCGGCTG CTGTTCCTGACGGGGGTCCGCACCGGCGAGCTGCGGCTGGCCGAACCCGAGCAGTTCGACCTCGACCGGGGCTTGTGGAT CATCCCACCGCAGGTCGTCAAGCAGCTTCAGGACGAAATGCGTAAGGCCGGGAAGCGCCCGCAGGACGTGCCGCCCTACA TCGTGCCCCTGTCCCTGCAGGCCATCGAGATCGTGCGCTATCTCCTGGGCGTGATGCGGCCGGCGCAGAAGTACCTACTG TCGCACCGCAGCGAACTCAAGAAGCGCATCAGCGAGAACACCATCAACAAGGCCTTGCAGCTCATGGGCTACGAGGGACG CCTGACCGGCCATGGCATCCGCGGCACCATCTCGACGGCGCTCAACGAGATCGGCTACCCGAAGATTTGGGTGGACGCAC AACTATCGCACTCCGACCCCAATAAGGTCAGCTCGGCCTACAACCACGCCAAATACGTGGAGCCGAGGCGCCGGATGATG CAGGACTGGGCCGATCGCCTCGACCTGCTCGAACAGGGTCAAGTGGAAGCCGCGAGCGCGCACCTGACCATCCGCATCGA CGGCGTGCCGGCGATGGCTGAAGTGGAGGAAGCGGTGGGCGCGGTGGACGCGGTGGACGCCGCCCCCACGGTGGCCGAGC CCGCTGTCCCTGGCGTGCCGCCCGTTGTCGCAACGCCCATCGTCGTGACGCCGAACAGCGGCGGGATCACGTTCCAGCGG CTGTCGCAGGTGCCCCCGCCGCCGGTGCATGCCCCGGAGCCGGAAGTCTCCGCGATCCAGCGCGAGCGCGAGGAAATGCT GGCCATCTACGAGTCGCCGAACAATCTGCCGGTTCCGCTGTTCGGCAAGCTGGCCGGGAAGTCCAAGGATCAGATCAACC GCGAGCTGAAGGCGGGCAAGCTGCTGTCCATCAGCCTGGGCAACCGGGGGCAGCGGGTTCCCGACTGGCAACTGGTGCCG CTCAAGCACAGGCTGGTCCAAGTGCTCATGAACCAGTGCCCGCACGCGGATTCGTGGGACCTGTACCGCATGCTGACCCA GCCCCATCCCGACCTGGGTGATCGCGCAGCCATTGACGCGGTGACGCCGGCCAACGTGCCCGCGATCATCCGGGTCATCA TGGGCGACTATCAGCAACGCGAGGATGTGCCCGAGGTCGTTGCTCCGCGATCCATCCCTGATGATGTGCGGCTGAGCGTT CGTCGGCTGGTGGATAGCGCCGTGGTGCTTGAGGGGGCCTAA Protein sequence : MALSDLTVRQARTTGKRYTLSDNDCLGLMVSAAGGKSWIFRYYWLGKQKRMSLGGYPALSLREARAERDKAQALLARGID PQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQSTLSQILRIFNKDVLPTLGKMSIYDIRRPQLVGVVAAIEK RKAFTTAEKVRTWFNQMFRYALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQAIEIVRYLLGVMRPAQKYLL SHRSELKKRISENTINKALQLMGYEGRLTGHGIRGTISTALNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMM QDWADRLDLLEQGQVEAASAHLTIRIDGVPAMAEVEEAVGAVDAVDAAPTVAEPAVPGVPPVVATPIVVTPNSGGITFQR LSQVPPPPVHAPEPEVSAIQREREEMLAIYESPNNLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNRGQRVPDWQLVP LKHRLVQVLMNQCPHADSWDLYRMLTQPHPDLGDRAAIDAVTPANVPAIIRVIMGDYQQREDVPEVVAPRSIPDDVRLSV RRLVDSAVVLEGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFG30104.1 | Int | Not tested | PAGI-2 | Protein | 0.0 | 91 |
| int | AAN62094.1 | putative integrase | Not tested | PAGI-2(C) | Protein | 0.0 | 80 |
