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Name : XF1716 (XF1716) Accession : NP_299005.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1634849 - 1637560 bp Length : 2712 bp Strand : + Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : TTGCAGATCGAATCTAGCCACGATTATCTGATTCAAACCCAAAGCACCTCCGAGACATTCGTGACCGTTCATACCCCGGA AGGACGTTTCTTGCAAAACATTGACATGAGAGAAAAGCCCGAAGGTGGGAAGGGCATGGCAGAACATACCCCACTGATGA AGCAATACTTCGCCGCCAAGGCTGAGTATCCAGACTTACTTTTGTTCTTCCGTATGGGAGATTTTTACGAGCTATTTCAT CAAGATGCTCGCAAGGCAGCGCGGTTACTCGATATCACGTTGACTCAGCGGGGTAGTTCCGGTGGTGCTCCGATCCCAAT GGCCGGTGTACCCGTTCATGCCTATGAAGGCTATTTGGCGCGGCTCATTGCCCTGGGTGAATCCGTTGCGATTTGCGAAC AAATTGGAGATCCAGGGCTTGCTAAAGGGTTGGTTGAACGTAAGGTGGTACGCATCGTCACTCCAGGTACGATCACTGAC GAGGTGTTACTGGAGGAGCGTCGCGACACTCTATTGATGGCCTTATCACGCAGTAAAAACTGTTATGGCTTGGCTTGGGC TGACTTAGCCGGTGGCCGTTTCCTGGTGAACGAAGTCAATAGCGAGGAGGCATTAGAAGCCGAACTCGCACGTCTGGAGC CAGCTGAGCTGTTACTCCCTGACGAGGATGCCTGGCCAGAGTATCTACAGCAGCGCAACGGTGTGCGTCGCCGTCCCCCA TGGTTGTTTGATGCTGACAGCGGCCGCCGTAAATTGCTGGCGTTTTTCAAACTGCACGATTTATCCGGCTTCGGTATCGA AAACAATCCACAAGCCACTGCGGCGGCGGGTGCACTCCTTGGCTACATTGAGGAAACACAGAAGCAGCGTCTACCGCACC TGACTTCAATTACGATGGAGACTGTTGGCGAAGCGATTACGATGAACGCTGCCACACGTCGCCATTTGGAGCTGGACACC CGTGTGGATGGGGAGAGCCGCCACACTCTGCTTGGGGTGCTCGATAGTACGGTGACCCCGATGGGCGGACGGTTGCTGCG GCGGTGGCTGCATCGGCCGCTGCGGCTGCGCGAGGTGGTAAGACAACGTCATGCTGCCGTCGGGAGCATGATCGATAGGG ATCTCGATAACAAACTCATGGAGACTTTCCGCAGGCTTGGCGACATGGAGCGGATTTTGACCCGCGTGGCATTGCGCTCA GCACGTCCACGTGACATCTCCACATTACGGGATAGCCTCAGCCTCCTGCCACGTTTACGTGAGCTTCTCAATGCATCGGA TTCCCCGCGCTTGCGCGTGTTGTACGCCGAGCTGGGTGAGCATGACAGCACCGCGTCTTTATTGGTAAAAGCCGTTGCAG AACAGCCACCCTTAAAGCTGACTGATGGCGGTGTGATCGCCTCAGAATACGATGTCGAATTGGACGAACTGCGTAAGCTC TCCAACAATGCGGATCAGTTCTTGATCGATCTTGAGACACGCGAGCGTGAATCCAGTGGTATTTCTACGCTGAAAGTGGG TTACAACCGCGTGCATGGTTACTATATTGAGATCAGCAAGGGCCAAGCCGACAAAGCACCCGTGCATTACACTCGGCGTC AGACACTGACTAACGCCGAGCGCTACATCACGGAGGAACTGAAAGCGTTCGAAGACAAAGTATTATCCGCACGTGATCGT GCGTTGGTGCGGGAAAAATTGTTGTACGAACAGCTGCTGGACACCGTCGGGGCGCAACTGGAACCGCTGAAGCGTTGTGC CGCTGCGTTATCTGAGCTAGATGTACTGGTCTGCTTTGCTGAGCGTGCACAGACATTGGATTGGGTGCGTCCGGAGTTGG AGCACACATCATGCTTGCATATTGAGGGTGGCCGTCACCCGGTTGTGGAAGCGGTGCGTGAACAGCGATTCGAGCCGAAT GACCTTGATCTTCACCCTGAGCGCCGCATGTTGGTTATCACCGGCCCCAATATGGGAGGCAAGTCGACCTACATGCGCCA GAATGCCTTGATTGTCCTGCTTGCTTATATCGGCAGCTACGTTCCGGCCAGCCGCGCGCTGATTGGACCGATTGACCGCA TCATGACCCGTATCGGTGCTGGTGATGACCTGGCCCGAGGTCAGTCGACATTTATGCTTGAGATGACAGAGACCAGCTAC ATTCTGCACCATGCGACCGCGCAGTCGCTGGTACTGATGGACGAAATTGGTCGGGGGACCTCGACTTACGATGGCTTGGC GTTGGCGGATGCAGTCGCACGCCACTTAGCTCATATCAACCGTTGTTATACGCTGTTTGCTACGCATTATTTTGAGCTGA CTGCACTAGCCGACGAAACATATGAGGGAGGTCTGAGCGGTATCGCTAACGTGCATTTCGATGCTGTCGAACATAGTGAA CGCTTGGTGTTCATGCACACAGTGAAGGATGGCCCGGCCAATCGCAGTTTTGGCCTACAGGTGGCTGCTTTGGCTGGTCT ACCAGCTGCGGCCGTCGCACACGCACGGCGGCGTTTAGCTGAACTGGAGCAGCGAGGCCGTGAAAGTCATGTTTCAGAAA TAACACCGCTGGCATTGGATGCACCGCAGCAGTGCAGTTTATTTGCGTCGGCGCCCTCAGCAGCTCAGGAAGCATTGGTT GCATTGCATCCGGATGAGTTGACCCCTAAGCAAGCACTAGAAGCGCTTTACCGACTCAAAGCGCTGCTATAA Protein sequence : MQIESSHDYLIQTQSTSETFVTVHTPEGRFLQNIDMREKPEGGKGMAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFH QDARKAARLLDITLTQRGSSGGAPIPMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAKGLVERKVVRIVTPGTITD EVLLEERRDTLLMALSRSKNCYGLAWADLAGGRFLVNEVNSEEALEAELARLEPAELLLPDEDAWPEYLQQRNGVRRRPP WLFDADSGRRKLLAFFKLHDLSGFGIENNPQATAAAGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDT RVDGESRHTLLGVLDSTVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDRDLDNKLMETFRRLGDMERILTRVALRS ARPRDISTLRDSLSLLPRLRELLNASDSPRLRVLYAELGEHDSTASLLVKAVAEQPPLKLTDGGVIASEYDVELDELRKL SNNADQFLIDLETRERESSGISTLKVGYNRVHGYYIEISKGQADKAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDR ALVREKLLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWVRPELEHTSCLHIEGGRHPVVEAVREQRFEPN DLDLHPERRMLVITGPNMGGKSTYMRQNALIVLLAYIGSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSY ILHHATAQSLVLMDEIGRGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALADETYEGGLSGIANVHFDAVEHSE RLVFMHTVKDGPANRSFGLQVAALAGLPAAAVAHARRRLAELEQRGRESHVSEITPLALDAPQQCSLFASAPSAAQEALV ALHPDELTPKQALEALYRLKALL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 6e-173 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XF1716 | NP_299005.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 54 |
