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Name : XF1183 (XF1183) Accession : NP_298473.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Virulence Product : polysaccharide biosynthetic protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 1131441 - 1132742 bp Length : 1302 bp Strand : + Note : similar to SP|Q04972 (percent identity: 52 %/query alignment coverage: 94.7 %/subject alignment coverage: 96.5 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : TTGAGTAGCATGGTTGCTGATAAGCAAGGGGAGCCAACGTTGGCACGCATCGCCGTGGTTGGACTAGGGTATGTGGGATT GCCGTTGGCGGTTGCGTTTGGTCGACAGCGTCCGACACTTGGGTTCGACATTGATATATGTCGGGTACAGCAGTTGTGTG CCGGTCATGACATCACTTGTGAAATTGAGCTTGAGGAACTCCAAGCTGCGCGACATTTGCGTTATAGCAGTGATCCTCGG GAGTTGAGTGACTGTCAGATTTTCATCATTACGGTGCCTACCCCTATTGATGTGGCTGAGCAACCGGATTTGGGGCCGCT TCGTTCGGCCAGCATGTTGGTTGCGTCGGTACTTAAGCCTGGGGATTTAGTGATCTATGAGTCCACAGTTTATCCGGGCA CCACGGAGGAAGTCTGTGTGCCATTGCTGGAGGTTGGGTCTGGGTTGTGCTTTAATGTCGATTTTCATTGTGGTTACAGT CCTGAGCGTATTAACCCTGGTGATCGTAAGCGTCGGCTACAGGACATCTGCAAGATTATTTCAGGTTCCACCCCGGATAT TACAGCTGTCGTGGACGCGTTATATTCGCAGATCATCGTTGCTGGTACTTGGTGTGCTCCGTCGATCAGAGTTGCCGAGG CAGCTAAGGTGGTTGAGAACATTCAGCGTGACGTGAATATTGCGTTGGTCAATGAGTTGGCATTGATCTTTAATCGGCTC GGTATCGACACCTTGGACGTTCTCGAAGCGGCAGAAACCAAGTGGAATTTTTTACCTTTCCGCCCGGGTTTGGTGGGTGG TCATTGCATCGGTGTGGATCCTTACTATTTGTTGCACAAATCCGAGAGTGTGGGGTATTACCCGGATTTGATTCATACGG CACGTCGCGTTAACAGTCGTGTTAGTTGGCATGTTGTGGACCGTGTTGTGGCTTTACTTGGTGAGCTTAGTGTGCCGATG ACACGTGCGGTGGTGCTTGTGTTGGGTGTTACCTTCAAGGAGGATTGTCCCGATTTACGTAACAGCCGTGCTTTGGATTT GGTGCGCATGTTCAGGACTTTAGGTGCGCAAGTCGATGTTTGCGATCCTTGTGCTGATCCGCAGCAAGCGTTGGAGCATG AGGCTGTCACGTTGTGTACGGAGCCCAAGGCCGGTGCTTATGATGCAATTGTGCTGGCGGTGGCGCATGCCCAGTACCGA ATGTACGATGTAGCGACTATTGCAGCTCTAGGTAAGCCGCAGGCGGTGGTTTATGATGTCAAATCAGTGTGGCCGCGTGC AGCGGTAACTGATCGTCTATAG Protein sequence : MSSMVADKQGEPTLARIAVVGLGYVGLPLAVAFGRQRPTLGFDIDICRVQQLCAGHDITCEIELEELQAARHLRYSSDPR ELSDCQIFIITVPTPIDVAEQPDLGPLRSASMLVASVLKPGDLVIYESTVYPGTTEEVCVPLLEVGSGLCFNVDFHCGYS PERINPGDRKRRLQDICKIISGSTPDITAVVDALYSQIIVAGTWCAPSIRVAEAAKVVENIQRDVNIALVNELALIFNRL GIDTLDVLEAAETKWNFLPFRPGLVGGHCIGVDPYYLLHKSESVGYYPDLIHTARRVNSRVSWHVVDRVVALLGELSVPM TRAVVLVLGVTFKEDCPDLRNSRALDLVRMFRTLGAQVDVCDPCADPQQALEHEAVTLCTEPKAGAYDAIVLAVAHAQYR MYDVATIAALGKPQAVVYDVKSVWPRAAVTDRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-103 | 53 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-103 | 53 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-87 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XF1183 | NP_298473.1 | polysaccharide biosynthetic protein | VFG0431 | Protein | 4e-104 | 53 |
