Gene Information

Name : CP0162 (CP0162)
Accession : NP_444714.1
Strain : Chlamydophila pneumoniae AR39
Genome accession: NC_002179
Putative virulence/resistance : Virulence
Product : sigma-54 dependent response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 164399 - 165583 bp
Length : 1185 bp
Strand : -
Note : sigma-54 dependent response regulator; identified by match to PFAM protein family HMM PF00158

DNA sequence : 
ATGAATCCATCCAGGGGAGAGAACATGGCGATTAAAAATATACTTGTTGTTGATGACGAGCCCCTACTCAGAGATTTCCT
CTCGGAACTTCTTACCTCACAGGGATTCATCCCAGACACTGCTGAAAACTTAAGAAATGCTCTCCAAATGATCCGAAGTC
GAGACTATGACCTTGTCATCTCAGACATGAGTATGCCTGACGGCTCTGGTCTTGATTTAATCAAAATTATAAAGCAAAGC
TCCCCCCACACGCCCGTCCTTGTAGTCACTGCTTACGGAAGCATAGAGAACGCCGTAGAGGCTATGCACCAAGGGGCATT
CAACTACTTAACAAAACCTTTTTCTTCTGAAGCACTTTTTGCCTTTATCTCTAAAGCTGAAGAACTTAAGAACCTAGTCC
ATGAGAATCTCTTTCTACATTCTCAGACAACACCAGATTCACACCCTCTGATTGCAGAAAGCAAGGCTATGAAAGATCTT
CTTGCCATAGCAAAAAAAGCAGCTTCAAGCTCAGCAAATATATTCATTCACGGAGAATCGGGATGCGGAAAGGAAGTCCT
CTCCTTTTTTATCCACCACAACTCTCCTCGAGCCAACCACCCCTATATTAAAGTTAACTGCGCAGCAATTCCTGAAACTC
TCTTAGAATCAGAACTTTTTGGCCATGAAAAGGGAGCATTTACAGGAGCAACTACAAAGAAGGCAGGACGTTTTGAACTT
GCCCATAAAGGAACCCTCTTATTAGATGAAATCACCGAAGTCCCAGTAAACCTTCAAGCAAAACTCCTGAGAGCTATCCA
AGAAAAAGAAATCGAACACCTTGGAGGAACCAAGACCCTCTCCGTAGATGTTCGCATCTTAGCGACCTCAAACCGAAAGC
TTAAAGAAGCTATCGATGATAAAAGCTTCCGACAAGATCTGTATTACCGGTTGAATGTCATCCCTCTACACCTCCCCCCT
CTAAGAGACCGACAGGACGACATCCTCCCTCTGGCGAACTACTTCCTAAATAAGTTCTGCCGCATGAACAATACTCCTCT
GAAAACCCTCTCTCCTAAAGCTCAAGAGCTCCTCCTTAACTACCCCTGGCCAGGCAATATTCGAGAGCTCTCCAATGTTC
TGGAACGTGTGGTTATCCTAGAGAACACCTCCCTACTCACCGAAGACATGCTCGCTTTAGCTTGA

Protein sequence : 
MNPSRGENMAIKNILVVDDEPLLRDFLSELLTSQGFIPDTAENLRNALQMIRSRDYDLVISDMSMPDGSGLDLIKIIKQS
SPHTPVLVVTAYGSIENAVEAMHQGAFNYLTKPFSSEALFAFISKAEELKNLVHENLFLHSQTTPDSHPLIAESKAMKDL
LAIAKKAASSSANIFIHGESGCGKEVLSFFIHHNSPRANHPYIKVNCAAIPETLLESELFGHEKGAFTGATTKKAGRFEL
AHKGTLLLDEITEVPVNLQAKLLRAIQEKEIEHLGGTKTLSVDVRILATSNRKLKEAIDDKSFRQDLYYRLNVIPLHLPP
LRDRQDDILPLANYFLNKFCRMNNTPLKTLSPKAQELLLNYPWPGNIRELSNVLERVVILENTSLLTEDMLALA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CP0162 NP_444714.1 sigma-54 dependent response regulator BAC0467 Protein 2e-75 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CP0162 NP_444714.1 sigma-54 dependent response regulator VFG1249 Protein 1e-79 45
CP0162 NP_444714.1 sigma-54 dependent response regulator VFG1214 Protein 4e-72 44
CP0162 NP_444714.1 sigma-54 dependent response regulator VFG0116 Protein 6e-64 42