Gene Information

Name : CP1047 (CP1047)
Accession : NP_445584.1
Strain : Chlamydophila pneumoniae AR39
Genome accession: NC_002179
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1138780 - 1139067 bp
Length : 288 bp
Strand : +
Note : type III secretion inner membrane protein SctS; identified by match to PFAM protein family HMM PF01313

DNA sequence : 
GTGTTAGCATTTTTCGCAACTAGTTTCAAATCTGTTCTTTTTGAGTACTCCTACCAATCATTATTACTTATTTTGATTGT
TTCGGCACCTCCCATCATCTTAGCTTCCATAGTCGGGATTATGGTTGCGATCTTCCAAGCCGCAACACAAATCCAAGAAC
AGACCTTCGCTTTTGCAGTCAAACTAGTCGTGATTTTTGGAACCTTAATGATCTCTGGAGGGTGGCTTAGCAATATGATT
TTACGCTTTGCAGGTCAGATTTTCCAAAACTTCTATAAATGGAAATAA

Protein sequence : 
MLAFFATSFKSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTLMISGGWLSNMI
LRFAGQIFQNFYKWK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 2e-11 45
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-10 45
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-05 44
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-05 44
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 5e-05 44
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 5e-05 44
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-05 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-10 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CP1047 NP_445584.1 type III secretion inner membrane protein SctS VFG2132 Protein 8e-35 89
CP1047 NP_445584.1 type III secretion inner membrane protein SctS VFG0043 Protein 6e-12 44
CP1047 NP_445584.1 type III secretion inner membrane protein SctS VFG0520 Protein 1e-05 44
CP1047 NP_445584.1 type III secretion inner membrane protein SctS VFG0187 Protein 3e-07 42