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Name : hsdR (Cj1549c) Accession : YP_002344921.1 Strain : Campylobacter jejuni NCTC 11168 Genome accession: NC_002163 Putative virulence/resistance : Unknown Product : type I restriction enzyme R protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 1479390 - 1482485 bp Length : 3096 bp Strand : - Note : Original (2000) note: Cj1549c, probable type I restriction enzyme R protein, len: 1031 aa; similar to many e.g. T1R1_ECOLI type I restriction enzyme EcoR124II R protein (EC 3.1.21.3) (1033 aa), fasta scores; opt: 353 z-score: 372.8 E(): 1.9e-13, 23.5% ide DNA sequence : ATGAGCAAGGCGAAGACTAGTGAGTTTGATTTAGAGCAGTTTGTTATATCATCACTACTTGAGCATGGGTGGTGCTATGA AAAGCCTGTAAGAGCCACTGATGAAGTTTTGCTAGAAACTAGCCTTGTAAATGCACTTTGTAGGCTAAATCCACAGCTTG ATTTATCAAAAGCTAATGAAATTTATAAGGAGCTAAAAAGCAAAAATCATCTTAGCCTTTTAGATAGCAATGAAAACTTT CATTATAAGCTTGTAAATGGGGTAAATATAAACACTACAAAAGACGGCGAAAGCAGAGCTGATATCATAAATCTAATTGA TTTTAATAATGCAAGCAACAATGAATTTATAGCAACAAACCAGCTAAGCATCACAGAAGCTAAAGAAAACAAAATCCCCG ATGTAGTGCTATATATAAATGGAATTCCGCTTGTTTTAATGGAGCTAAAAAGCCCAAGCGATGAAAACGCCACGATAAAC TCAGCTTATAATCAAATAAACACTTATAAACAAACAATCCCAAGTATTTTTACATATAATGCTTTTTGTGTGATAAGCGA TGGGTATTTTGCTAGGGCGGGGAGTATTTCGGCTGATTTTTCAAGGTTTATGGCGTGGAAAAGTAGCGATGGGATAAACT ACGCTCCAAACAAGTCTTTAGAAATTAAAACCTTAATAGATGGTATGCTAAATCCAAAAACCTTGCTAGATATCATTTGC AATTTCATAGTTTTTGAAAAAGAGCAAATAAGAGATTTAAATGGTATTTTAAGTATAAAAACTACCAAAAAAATCGCTTG CTATCATCAATACTACGCAGTAAATAAAGCCATTAGTAGAACAATCACAGCAAGTAGCAAAGACGGAGATAAAAAAGGTG GCGTGGTGTGGCATACGCAAGGTAGTGGGAAGTCTTTGTCTATGGTGTTTTATAGTGCTAAAGCGATAAAGGCTTTAAAT AATCCTACGATTTTGCTTATCACGGATAGAAATGATCTAGATGATCAGCTTTTTGGTACTTTTGCAAGTTGTGCGAACCT TTTAAGACAAGAGCCAAAACAAGCAAACGATAAAGAGCATTTAAAAGAGCTTTTAAGGGTAGCTAGTGGTGGAGTGGTAT TTACTACTATTCAAAAATTTAGTCCAGAAAATGATAATGTATTTGAGTGCTTATCGCTTAGAGATAATATCATCGTAATT GCAGATGAAGCACACAGAACCCAATACGGCTTTGATGCAAAAGTAGTAGAAGAAAAGTCAAAAAGTGGCGATGTGCTAGG GCAAAAGATAGTTTATGGTTTCGCAAAATATCTGCGTGATGCTTTGCCAAATGCTACTTATATAGGATTTACAGGAACGC CAATTGAAAGCCATGATATAAACACCCCTGCAGTTTTTGGAAACTACATAGATATATATGATATATCAAGAGCTGTTGAA GATGGTGCTACTGTGAGTATATATTATGAAAGCAGACTTGCCAAAATAGAGCTAAGCGAAGAAGGAAAAAGGCTTGTAAA TGAATTAGATGAAAAGCTTGAAAACCAAGATAGCCAAAAAGCAAAAGCTACTAAGCTAGAAGCTTTAGTAGGTAGCACAA GCAGACTAAAACAAATCGCTAAAGATATAGTAAAACACTTTGAAACAAGGTCTAGTAAGCTCGGCGGAAAAGGTATGATA GTAAGTATAAGCCGAAGCGTAGCTATAAAACTATATGATGAAATCATAAAAATAAGACCAAGTTGGCATAGCGATGAGCT AAGTAGCGGGGCTATAAAAGTAGTGATGACTTCAAGCTCTAGCGATGGGGTAGAGTTTAGTAAACATCATACAAGTAAGA TTCAAAAGCAGTTTTTGGCAAATCGTATGAGAAATATAGACGATGAATTAAAACTAGTTATAGTGGTGGATATGTGGCTA ACTGGCTTTGATGTGCCATCGCTTCATACTCTTTATATAGATAAGCCTATGAAAGGGCATAATCTAATGCAAGCTATAGC TAGAGTAAATAGGGTTTATAAGGATAAACCTAGTGGGCTTGTGGTGGATTATCTTGGGATTGCAAGTGATTTGAAAAAAG CTTTATCATTTTATAGTGAAAGTGGTGGCAAGGGCGATATAATCACTACTCAAGAAGACGCTGTAAAAGTGATGATAGAA AAGCTTGAAATCGTAGAACAAATGCTGCCAAATGACTATGAAAAATACTTTGAACTTGATACGGGGGCTAAACTTGAATA TATACTTGATGTAGAAGAGCATATATTATCAAATGAAGATGGTAAGAACAGATTTATAAAAGAATTTGCAGCACTTGATA AAGCCTACACGATAGCTATGCCACACGAAAAAGCTTTGAGCATAAAGAATAAAATCGCTTTTATGTATGCGATAAAGGCT AGGTTTTTAAAGTTTGCTAAAGAAAATGAGAATGAAAATTTGCTTAATCAAGCTTTGATAAAGCAAGTAGTAGATAAAGC TATTGTATCATCTAAAGTGGTGGATATTTTTGATGCTAGTGGTATAAAAAAGCCTGATATATCTATACTTTCTGATGAGT TTTTACTAGAAGTAAAGAATATGAAGCGTAAAAATTTAGCCTTTGAAATGCTAAAAAAGATACTAAATGATGAGATAAAA GCAAGAGAAAAGCTAAGCCTAACAAAGGCTAAAAAATTAGCACAAATGCTTAGTGATGCTATCAAAAAATATAACAATAA GCTAATCTCATCAAGCGAGGCACTAGATGAGCTAATAAATATGAGTAAAAGCATAGTAAGTATGGAAGATGAGGCTAAGA AGTTAGGTTTAAAAGACTATGAATACGCCTTTTACTCAGCACTTGCTTGTAATGATGAGTATGAAAAGATTTTAGGCAAT GAAAAACTATTAGCACTCGTTAGTGAAATACTGCAAATTATCAAAAACAATGTAAGTATAGACTGGATGATAAAAGAAAA TGTAAGAGCAAGATTAAGAGTAGCTGTAAAAAGAGTGTTAAATAAGTATGGTTATCCACCTGATATGCAACAACTTGCAA TTGATGGAGTTTTAGCTCAAGCTGAAATTTTGGCTAAGGAATTAGCTAACGAGTAG Protein sequence : MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENF HYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDIIC NFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALN NPTILLITDRNDLDDQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLSLRDNIIVI ADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVE DGATVSIYYESRLAKIELSEEGKRLVNELDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMI VSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDMWL TGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIE KLEIVEQMLPNDYEKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKA RFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIK AREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGN EKLLALVSEILQIIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELANE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 43 |
