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Name : fliP (jhp0625) Accession : NP_223343.1 Strain : Helicobacter pylori J99 Genome accession: NC_000921 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 694306 - 695052 bp Length : 747 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : GTGCGTTTTTTCATTTTTTTAATTCTCATTTGCCCTTTAATATGCCCCTTAATGAGCGCGGATAGCGCTTTACCTAGCGT CAATCTCTCTTTAAACGCTCCTAGTGATCCTAAACAACTCGTAACCACCCTTAATGTCATCGCCTTACTCACGCTTTTGG TTTTAGCCCCATCGTTGATTTTAGTGATGACGAGTTTCACCCGTTTGATCGTGGTGTTTTCTTTTTTAAGGACCGCTTTA GGCACGCAACAAACCCCACCCACTCAAATTCTAGTCTCGCTCTCTTTGATATTGACTTTTTTTATCATGGAACCTAGCTT GAAAAAGGCTTATGATACAGGGATTAAGCCTTATATGGATAAAAAGATTTCTTACACCGAAGCGTTTGAAAAAAGCACTC TGCCTTTCAAGGAATTCATGCTTAAAAACACACGAGAAAAAGATCTAGCCCTTTTTTTTAGGATTAGGAATTTGCCTAAC CCTAAAACCCCTGATGATGTGAGCTTGAGCGTTTTAATCCCGGCATTTATGATAAGCGAGTTGAAAACAGCGTTTCAAAT CGGCTTTTTACTCTACTTGCCTTTTTTGGTGATTGATATGGTTATCAGCTCTATTTTAATGGCGATGGGTATGATGATGC TCCCGCCTGTAATGATTTCTCTGCCTTTTAAAATTTTGGTGTTTATTCTGGTGGATGGGTTTAATTTATTGACCGAAAAT TTAGTGGCGAGTTTTAAAATGGTTTAA Protein sequence : MRFFIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTAL GTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPN PKTPDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN LVASFKMV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 9e-26 | 45 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 5e-25 | 45 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 5e-25 | 45 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-25 | 45 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-25 | 45 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 2e-20 | 45 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-21 | 45 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-21 | 45 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 4e-21 | 45 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 4e-21 | 45 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 4e-21 | 45 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 4e-21 | 45 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 4e-21 | 45 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-21 | 45 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-21 | 45 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-21 | 45 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-21 | 45 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-22 | 45 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-22 | 45 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 1e-22 | 43 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 5e-21 | 43 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-23 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 6e-41 | 55 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 7e-44 | 55 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 1e-41 | 54 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-40 | 53 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 5e-26 | 45 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG0827 | Protein | 2e-21 | 45 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG0715 | Protein | 1e-20 | 45 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 1e-23 | 41 |
| fliP | NP_223343.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 8e-23 | 41 |
