Gene Information

Name : cagD (jhp0493)
Accession : NP_223211.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 541857 - 542483 bp
Length : 627 bp
Strand : -
Note : similar to H. pylori 26695 gene HP0545

DNA sequence : 
TTGATCAACAATAATAATAACAATAAAAAACTGAGAGGCTTTTTTTTGAAAGTTCTCTTAAGTCTCGTTGTTTTCAGTTC
GTATGGGTCAGCAAATGACGATAAAGAAGCCAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCCAATGGGCTTGTTT
ATACGAATTTAGATTTTGATAGTTTTAAAGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAAT
CCCGATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTA
CGATCCAGTTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATGTAGAATTACAGATCAATCCTGAAG
TGAAAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTATCATTGCACGGAGAAACAAGA
GAAATTTTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTATGATCCTAATGATCTTTTGAAACA
CATTAGCACCATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNNNNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEALEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVN
PDIIKDEVFDFVIVNRVLKKIKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLHGETR
EILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 2e-72 100
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 4e-72 99
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 3e-72 99
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 99
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 2e-72 98
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 3e-72 98
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-71 98
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 3e-71 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 2e-70 98
cagD AAF80210.1 CagD Virulence cag PAI Protein 3e-71 98
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-71 97
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-72 97
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-71 97
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-70 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-70 96
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 96
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-70 96
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 96
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 96
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-69 95
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-70 95
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-69 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagD NP_223211.1 cag island protein VFG0304 Protein 9e-72 98