Gene Information

Name : cagH (jhp0489)
Accession : NP_223207.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 536477 - 537589 bp
Length : 1113 bp
Strand : -
Note : similar to H. pylori 26695 gene HP0541

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGATTCTTATCGCAAGTCTCCTCAATCATCTCAAGCACAAG
TGGTGTCGCAGGGCCATTTGCAGGAATAGTAGCGGGCGCTATGACAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCTGTAAGCGTGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAAGCGCGCAAATTAGTGCTGTCAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACTACCCCTAAAAATCCTAGCGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGCGTGCCAACA
ACGGTTGAAATGATGAGCGGTATATTAGGCAATATTACAAGCGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGCGCACTTGTTG
GCTCATCAAAAGTGTTTTTCAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTTTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGGTTGCCACTAAAGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAGGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAGAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTATCTTGATTACAT
CAAAGACAAGCTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAGACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQSAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAK
YQAVATKALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 5e-162 100
cagH AAC44699.1 CagH Virulence cag PAI Protein 2e-160 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 7e-159 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 8e-158 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 6e-159 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 7e-158 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 6e-159 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 3e-158 98
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-159 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 6e-158 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-158 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-159 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-158 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-158 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 3e-159 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-158 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-158 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-158 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-157 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-157 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 97
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-158 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-157 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagH NP_223207.1 cag island protein VFG0300 Protein 3e-158 98