Gene Information

Name : cagL (jhp0487)
Accession : NP_223205.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 534611 - 535324 bp
Length : 714 bp
Strand : -
Note : similar to H. pylori 26695 gene HP0539

DNA sequence : 
ATGAAAACACTCGTGAAAAATACCATATATTCTTTTTTGCTATTGTCTGTTTTGATGGCAGAAGATATAACAAGCGGCTT
AAAGCAACTGGATAACACCTACCAAGAGACCAACCAACAAGTGCTCAAAAACCTAGATGAGATTTTTTCAACCACTAGCC
CTAGCGCTAATAATAAAATAGGTCAAGAAGATGCTCTAAACATCAAAAAAGCGGCCATTGCTTTGAGAGGAGATTTAGCG
TTATTGAAAGCCAATTTTGAAGCGAATGAGTTATTTTTCATCTCAGAAGATGTGATTTTTAAGACTTATATGTCTAGCCC
TGAACTTTTATTAACCTATATGAAAATCAATCCCTTAGACCAAAAGACTGCTGAGCAACAATGCGGAATATCCGATAAAG
TTTTAGTTCTTTATTGTGAGGGGAAGCTGAAAATCGAGCAAGAAAAACAAAATATAAGAGAGCGTTTAGAAACTTCTCTA
AAGGCATATCAGAGCAACATTGGAGGTACAGCTTCCTTAATCACTGCTTCACAGACGCTTGTAGAAAGCCTAAAAAATAA
AAATTTCATCAAAGGAATCAAAAAGCTTATGTTAGCTCACAACAAGGTCTTTTTAAATTATTTAGAGGAGTTGGACGCAT
TAGAAAGATCCCTAGAACAAAGTAAGCGACAATACCTACAAGAAAGGCAATCAAGTAAGATCATTGTTAAATGA

Protein sequence : 
MKTLVKNTIYSFLLLSVLMAEDITSGLKQLDNTYQETNQQVLKNLDEIFSTTSPSANNKIGQEDALNIKKAAIALRGDLA
LLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQKTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSL
KAYQSNIGGTASLITASQTLVESLKNKNFIKGIKKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQSSKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagL NP_223205.1 cag island protein Virulence cag PAI Protein 2e-104 100
cagL AGC69801.1 cag pathogenicity island protein L Virulence cag PAI Protein 8e-103 99
HP0539 BAD14037.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-103 99
cagL YP_003728725.1 cag pathogenicity island protein L Virulence cag PAI Protein 1e-102 99
cag18 AAR03873.1 Cag18 Virulence cag PAI Protein 4e-102 98
cag18 AAR03901.1 Cag18 Virulence cag PAI Protein 1e-102 98
HP0539 NP_207335.1 cag pathogenicity island protein (cag18) Virulence cag PAI Protein 9e-102 98
HP0539 BAD13927.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-103 98
cag18 AAR03931.1 Cag18 Virulence cag PAI Protein 2e-103 98
cagL AAC44697.1 CagL Virulence cag PAI Protein 6e-102 98
HP0539 BAD13872.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-100 97
HP0539 BAD13982.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-101 97
cag18 AAR03962.1 Cag18 Virulence cag PAI Protein 6e-102 97
cagL YP_005775739.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-100 97
cagL YP_005774532.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-100 96
cagL YP_005777280.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-100 96
HP0539 BAD13955.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
HP0539 BAD14010.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
HP0539 BAD13818.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
HP0539 BAD13845.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-100 96
HP0539 BAD14064.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-98 95
HP0539 BAD13791.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-100 95
HP0539 BAD13900.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-100 95
cagL YP_005779054.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-100 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagL NP_223205.1 cag island protein VFG0298 Protein 4e-102 98