Gene Information

Name : cagN (jhp0486)
Accession : NP_223204.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 533609 - 534529 bp
Length : 921 bp
Strand : +
Note : similar to H. pylori 26695 gene HP0538

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTGGTTGTTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAGAATTGGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGACATGACG
ACAAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGGAATGATAGGGCGAGAGTA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAGAGG
ATTGCAAGAATTAAACGAAATTAACGCTAACCCTTTGAATGACAACCCTAATGGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAATTTTGATGAGATGATCAATAAGGTGAATGAATCTTTTGTGAAACCTGCTGCTCCGCTTGTACCTGAT
GAGTGGAGAACGCCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACCTGAGTGGTTTAAAACTCGCTCTCAATAACAGCGACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGCAC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARV
EQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNEINANPLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSDNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGTTDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-123 100
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-121 98
cagN AAF80207.2 CagN Virulence cag PAI Protein 1e-121 98
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-120 97
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 3e-120 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-115 96
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 4e-120 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 4e-118 96
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 2e-119 96
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 3e-119 96
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 95
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 95
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-117 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-119 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 5e-117 95
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 94
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 94
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 94
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 94
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 94
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-112 93
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-112 93
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-111 93
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN NP_223204.1 cag island protein VFG0297 Protein 1e-120 96