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Name : cagS (jhp0482) Accession : NP_223200.1 Strain : Helicobacter pylori J99 Genome accession: NC_000921 Putative virulence/resistance : Virulence Product : cag island protein Function : - COG functional category : - COG ID : - EC number : - Position : 529660 - 530259 bp Length : 600 bp Strand : - Note : similar to H. pylori 26695 gene HP0534 DNA sequence : ATGAGTAATAACATGCGAAAACTCTTCTCAATGATTGCCAACTCAAAAGATAAGAAAGAAAAACTTATTGAGAGCTTGCA GGAGAACGAACTTTTAAACACTGATGAAAAAAAGAAAATCATAGATCAAATAAAAACCATGCATGATTTTTTCAAACAGA TGCATACAAACAAGGGAGCGTTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGTGCTGTTATCAAAAGCATTGGT GTTGATAAGTTTAAAAAGGTTTATCGATTGCTTGAGAGTGAGACTATGGAGCTGTTGCATGCGATTGCAGAGAATCCTAA TTTCTTATTCTCTAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGTAAGCCCATCATGTTCAAGATGA GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGGCACTAAGCTCCCACCATTGAAATTGTTTGTGATGACAGATGAA GAAGTTAATTTCTATGCTAACCTAAAAACCATTGAACAATATAACGACTATGTTAGGGATTTGTTGATGAAATTTGATCT TGAAAAATACATGGAAGAAAAAGGAGTGCAAAATGCTTGA Protein sequence : MSNNMRKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPPLKLFVMTDE EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKGVQNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cagS | NP_223200.1 | cag island protein | Virulence | cag PAI | Protein | 4e-89 | 100 |
| HP0534 | BAD14032.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-87 | 99 |
| HP0534 | BAD13840.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-87 | 99 |
| cagS | AAF80204.1 | CagS | Virulence | cag PAI | Protein | 2e-87 | 99 |
| cag13 | AAR03868.1 | Cag13 | Virulence | cag PAI | Protein | 6e-87 | 98 |
| HP0534 | BAD13950.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-87 | 98 |
| HP0534 | BAD14005.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-87 | 98 |
| HP0534 | NP_207330.1 | cag pathogenicity island protein (cag13) | Virulence | cag PAI | Protein | 1e-85 | 98 |
| HP0534 | BAD14059.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-87 | 98 |
| HP0534 | BAD13786.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-87 | 98 |
| HP0534 | BAD13895.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-87 | 98 |
| cagS | YP_005774536.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-87 | 98 |
| HP0534 | BAD13813.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-86 | 98 |
| cagS | YP_005779057.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-87 | 98 |
| HP0534 | BAD13977.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-86 | 97 |
| cag13 | AAR03926.1 | Cag13 | Virulence | cag PAI | Protein | 6e-86 | 97 |
| HP0534 | BAD13922.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-86 | 97 |
| HP0534 | BAD13867.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-86 | 97 |
| cagS | YP_005775736.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-86 | 97 |
| cag13 | AAR03957.1 | Cag13 | Virulence | cag PAI | Protein | 2e-86 | 97 |
| cagS | YP_005777277.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-86 | 97 |
| cag13 | AAR03896.1 | Cag13 | Virulence | cag PAI | Protein | 2e-86 | 97 |
| cagS | YP_003728731.1 | cag pathogenicity island protein S | Virulence | cag PAI | Protein | 4e-86 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cagS | NP_223200.1 | cag island protein | VFG0293 | Protein | 3e-86 | 98 |
