Gene Information

Name : orf17 (jhp0479)
Accession : NP_223197.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3736
EC number : -
Position : 526781 - 527539 bp
Length : 759 bp
Strand : -
Note : similar to H. pylori 26695 gene HP0530

DNA sequence : 
ATGTTAGGGAAAAAAAACGAAGAAGTCTTGATTGATGAAAATTTGGTTGGGGGTGTGATAGCCCTTGATAGATTGGCAAA
ACTCAATAAGGCCAATAGGACTTTCAAAAGGGCTTTTTATCTCTCTATGGTGCTCAATGTCGCCGCTGTAACGAGTATTG
TGATGATGATGCCTTTGAAGAAAACAGATATATTTGTTTATGGCATTGATCGATACACAGGAGAATTTAAAATCGTCAAA
CGCTCCGATGCTAGGCAAATCGTCAATTCTGAAGCCGTTGTGGATAGTGCAACTTCAAAATTTGTCTCATTGCTGTTTGG
TTATAGCAAAAATTCTTTGAGGGATCGCAAGGATCAACTAATGCAGTATTGCGATGTGAGTTTCCAAACCCAAGCAATGA
GAATGTTCAATGAAAATATCAGACAATTCGTAGATAAAGTCCGAGCAGAAGCTATCATTAGCTCCAACATACAAAGAGAA
AAAGTCAAAAATAGTCCCTTAACGAGATTAACATTTTTCATTACCATCAAAATCACGCCTGATACAATGGAAAATTATGA
ATATATCACTAAAAAACAAGTAACTATTTATTATGATTTTGCTAGAGGTAACTCTTCTCAAGAAAATCTTATCATCAACC
CTTTTGGCTTCAAAGTGTTTGACATTCAAATCACGGATTTACAAAACGAACAGACAGTAAGCGAAATTTTGAGAAAGATT
AAAGAAGTGGAATCAAAAAATAAGGCATTAAATAAATAA

Protein sequence : 
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMVLNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVK
RSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQRE
KVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKI
KEVESKNKALNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 NP_223197.1 cag island protein Virulence cag PAI Protein 5e-114 100
HP0530 BAD13809.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
HP0530 BAD14001.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-113 99
cagV YP_003728734.1 cag pathogenicity island protein V Virulence cag PAI Protein 6e-113 99
HP0530 BAD14055.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
cag-V AAF80201.1 Cag-V Virulence cag PAI Protein 6e-113 99
cagV YP_005775733.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
HP0530 BAD13836.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
HP0530 BAD13973.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-113 99
cagV YP_005779060.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
HP0530 BAD13918.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
cag10 AAR03893.1 Cag10 Virulence cag PAI Protein 5e-113 99
cagV YP_005774539.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
HP0530 BAD14029.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
cagV AGC69797.1 cag pathogenicity island protein V Virulence cag PAI Protein 4e-113 99
cagV YP_005777274.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
cag10 AAR03865.1 Cag10 Virulence cag PAI Protein 1e-113 99
HP0530 BAD13863.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
HP0530 NP_207326.1 cag pathogenicity island protein (cag10) Virulence cag PAI Protein 2e-113 99
cag10 AAR03923.1 Cag10 Virulence cag PAI Protein 1e-113 99
cag10 AAR03954.1 Cag10 Virulence cag PAI Protein 1e-113 99
HP0530 BAD13782.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
HP0530 BAD13946.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-113 99
HP0530 BAD13891.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
orf17 NP_223197.1 cag island protein VFG0290 Protein 9e-114 99