Gene Information

Name : orf16 (jhp0478)
Accession : NP_223196.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG1480
EC number : -
Position : 525169 - 526776 bp
Length : 1608 bp
Strand : -
Note : similar to H. pylori 26695 gene HP0529

DNA sequence : 
ATGTTTAATATTAAAAGGACTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGCTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTATCCATGGATAGCGTACTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATATTCTTTTACAAATAATTGGCTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGTAAAGAATTCACTGCAAATAAACTGCAAAACAACACTATAGCCATGCTTG
CTTTTGCCGCATTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAACGGCATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCTATTTATTTT
GGTTTAGCAGGTGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTTTTCCCTATTGCAGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATCTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGATTGGGTATCGATTCAACTATTGCGAGT
TTGATCACTCTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGCGTCAATGCGATCGTTAACACCATTTTCAG
CTCTGTCTCTATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTGGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSVLDNLSNKIQNFTK
GGVEDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFTANKLQNNTIAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 100
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 99
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 99
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 99
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
orf16 NP_223196.1 cag island protein VFG0289 Protein 0.0 99