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Name : virD4 (jhp0473) Accession : NP_223191.1 Strain : Helicobacter pylori J99 Genome accession: NC_000921 Putative virulence/resistance : Virulence Product : cag island protein, DNA transfer protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 514088 - 516334 bp Length : 2247 bp Strand : - Note : similar to H. pylori 26695 gene HP0524 DNA sequence : ATGGAAGACTTTTTGTATAACACCTTATATTTCATAGAGGATTATAAGTTGGTTGTTATTTTTAGTTTCATAGGGTTAAT AGCGTTATTTTTCCTCTACAAATTCATAAAAACTCAAAAAAAGGTTTTTAAAGATAAAGCTAACCAGCCTCAAAAGAAAA AAAGCTTTAAAGAAATCATTATAGATGGGCTGAAAGAAAGGGTTAAAACCTTTGGCTTTTGGTTGCAAGCTATACTATTA CTATCCTATTCTTTTATCACATCAGGGTTATTTTTCTTGATTCTCTTAGGTAATTTTTATGATGATAATAGATTGCCTGA GAGCGATGATGATCTTTTTGATATATGGGTCTATGCGATACAAGATTTTCCTGCATACTATTTTAAGGCACTCACTTTTA GCTCGCTCAAGATTTATGGGTTCAATATATCCTTAGTCGTATATAGTTCTATTTTATGCTCTTATATATTCATTACCTTT TTTGTGTGGTTCTTAAAATACTTAACTCGGACTAGGGACATAGGAGCGAATAAAAAAGTTGATGATCTCTTTGGTAGCGC GAGTTGGGAAACTGAAGAGAAAATGATCAAAGCCAAGCTTATCACACCCAACAATAAAAAACGCGCCTTTGACAAACGAG AGGTTATTGTAGGCAGGCGTGGCTTAGGGGATTTTATCGCTTACGCAGGACAGGCGTTTATTGGCTTGATTGCTCCTACT AGGAGCGGTAAGGGTGTGGGTTTCATCATGCCCAATATGATCAATTACCCTCAAAATATCGTTGTGTTTGATCCTAAGGC TGACACTATGGAAACTTGCGGGAAAATCAGAGAAAAACGCTTCAACCAAAAAGTGTTCATCTATGAACCTTTCTCCTTAA AAACACACCGATTTAATCCTTTCGCTTATGTGGATTTTGGTAATGATGTGGTTTTGACTGAAGACATACTCTCTCAAATT GACACACGCCTAAAAGGGCATGGCATGGTGGCTAGTGGAGGGGATTTTTCCACTCAAATCTTTGGATTGGCTAAGTTGGT GTTCCCTGAAAGACCTAATGAAAAAGATCCTTTTTTTAGCAATCAGGCGCGAAACCTTTTTGTCATCAATTGCAATATTT ATAGGGATCTCATGTGGACTAAAAAGGGGCTTGAGTTTGTCAAAAGAAAAAAAATCATCATGCCTGAAACCCCCACGATG TTTTTCATAGGTTCTATGGCAAGCGGTATCAACTTGATTGATGAAGACACAAACATGGAAAAAGTCGTGTCTTTAATGGA ATTTTTTGGAGGTGAAGAAGATAAGAGTGGCGACAATCTAAGAGCGCTTAGTCCTGCCACTAGAAACATGTGGAATAACT TCAAGACAATGGGTGGCGCTAAAGAAACTTACAGCTCGGTTCAAGGGGTCTATACATCAGCGTTTGCGCCTTACAATAAC GCCATGATCAGGAATTTCACGAGCGCTAATGATTTTGATTTCAGGCGTTTAAGGATCGATGCAGTGAGTATTGGTGTGAT CGCTAATCCTAAAGAAAGCACTATTGTTGGACCGATATTAGAGCTGTTTTTCAACGTGATGATTTATAGCAATTTGATTC TGCCAATCCATGATCCACAATGCAAAAGAAGCTGCTTGATGCTCATGGATGAATTTACGCTCTGTGGCTATTTAGAGACC TTTGTTAAAGCGGTAGGGATCATGGCAGAATACAACATGCGCCCCGCTTTTGTGTTTCAAAGTAAGGCGCAATTAGAAAA CGACCCCCCACTTGGTTATGGTAGGAATGGCGCTAAGACTATTTTAGACAACCTTTCTTTGAATATGTATTATGGGATCA ACAACGATAACTACTATGAACATTTTGAAAAGCTTTCTAAAGTGTTAGGGAAATACACAAGGCAAGATGTGAGCCGGAGC ATTGATGATAATACGGGTAAGACCAACACTTCTATCAGCAACAAGGAGCGGTTTTTGATGACCCCTGATGAATTGATGAC TATGGGCGATGAGCTTATCATTTTAGAAAACACGCTCAAACCCATCAAGTGCCACAAGGCGCTTTACTATGATGATCCCT TCTTCACCGATGAGCTCATTAAGGTGAGTCCAAGCTTGAGCAAGAAATACAAATTGGGGAAAGTGCCTAATCAAGCAACA TTTTATGATGACTTGCAAGCCGCTAAAACCAGAGGCGAATTGAGCTATGATAAATCTTTAGTGCCTGTGGGTTCAAGCGA ACTGTGA Protein sequence : MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKTQKKVFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWVYAIQDFPAYYFKALTFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGAKETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4 | NP_223191.1 | cag island protein, DNA transfer protein | Virulence | cag PAI | Protein | 0.0 | 100 |
| HP0524 | BAD13885.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13803.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag-beta | AAF80195.1 | Cag-beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005779066.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03947.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13776.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005777268.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03858.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13830.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | NP_207320.1 | cag pathogenicity island protein (cag5) | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD14023.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13967.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_003728740.1 | cag pathogenicity island protein beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03887.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03916.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13995.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13940.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13912.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005774545.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005775727.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0524 | BAD13857.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0524 | BAD14049.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| virD4 | NP_223191.1 | cag island protein, DNA transfer protein | VFG0284 | Protein | 0.0 | 99 |
