Gene Information

Name : orf9 (jhp0472)
Accession : NP_223190.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 513097 - 513606 bp
Length : 510 bp
Strand : +
Note : similar to H. pylori 26695 gene HP0523

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTGACCTTACTCCTTAGTTCCTTAGGCTATCCATGCCAAAAGGTAAGTATTAGTTTCAA
GCAATACGAAAATCTTATCCATATCCATCAAAAAGGTTGCAACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TACTAGAAAGCTCTCTAGGGTTGAACAACAAGCGAGAAAAATCCCTTAAAGACACTTCTTACTCCATGTTCCATATCACC
TTAAACACCGCTAAAAAGTTCTACCCTACCTATTCTAAAACGCTCCTCAAAACCAAATTGTTAAATGATGTGGGTTTTGC
GATCCAATTAGCCAAACAAATTTTAAAAGAAAATTTTGATTATTACCACCAAAAACACCCCAACAAAAGCGTGTATCAAT
TAGTAGAAATGGCCATAGGCGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTACATGAAGAAGTTTCGTTGC
ATTTATTCTCAAGTGCGATACAACGAATAA

Protein sequence : 
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYYHQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYMKKFRC
IYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 4e-65 100
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 3e-62 97
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 2e-67 95
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 3e-68 95
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 2e-68 95
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 4e-66 92
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 1e-65 92
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 2e-65 92
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 7e-66 92
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 92
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 4e-66 92
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-65 92
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-65 92
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-66 92
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-66 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 3e-65 92
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-65 91
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-65 91
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 2e-65 91
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 2e-64 90
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-64 90
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-64 89
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-46 87

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
orf9 NP_223190.1 cag island protein VFG0283 Protein 8e-69 95