Gene Information

Name : orf6 (jhp0469)
Accession : NP_223187.1
Strain : Helicobacter pylori J99
Genome accession: NC_000921
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 510500 - 510847 bp
Length : 348 bp
Strand : +
Note : similar to H. pylori 26695 gene HP0520

DNA sequence : 
ATGGCTGACACAATCAATACAACTGAAACAACCCATGAAACAAAGAAGCCAAACGCTTTTGTAAATTTTTTCAAAAACAA
TTTGACTGATAAGCGTTATGATTCATTAGGTCTCATTGGAGCGGGGGTTTTATGTTGTGTCTTGAGCGGTGCTATGGGGA
TTGTTGGGATAATCTTTGTCGCAATAGGAATCTTTTTGTCTTTTTCTAATATCAACTTAGTGAAATTGGTTGAAAAATTG
TCCAAAAAACAACCTAAAGCGGCCACAACTGTCAATAACGAAACCCAAAAATCTCAAGCAGCAAGCGTTACCAACGAACC
AACTGAAGCTAAAGAGACTAAAGATTGA

Protein sequence : 
MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKL
SKKQPKAATTVNNETQKSQAASVTNEPTEAKETKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf6 NP_223187.1 cag island protein Not tested cag PAI Protein 1e-30 100
cag1 ABQ45815.1 Cag pathogenicity island protein Virulence cag PAI Protein 5e-30 98
cag-zeta AAF80191.1 Cag-zeta Virulence cag PAI Protein 4e-30 98
HP0520 BAD13800.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-31 97
HP0520 BAD14046.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-31 97
cag1 ABQ45820.1 Cag pathogenicity island protein Virulence cag PAI Protein 8e-31 97
HP0520 BAD14019.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-30 97
cag1 ABQ45816.1 Cag pathogenicity island protein Virulence cag PAI Protein 4e-30 97
cag1 ABQ45826.1 Cag pathogenicity island protein Virulence cag PAI Protein 9e-30 97
cag1 AAR03853.1 Cag1 Virulence cag PAI Protein 2e-23 97
cag1 AAR03883.1 Cag1 Virulence cag PAI Protein 6e-30 97
cag1 ABQ45814.1 Cag pathogenicity island protein Virulence cag PAI Protein 7e-31 96
HP0520 NP_207317.1 cag pathogenicity island protein (cag1) Virulence cag PAI Protein 2e-30 96
HP0520 BAD13937.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-30 96
cag1 ABQ45817.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-30 96
cag1 ABQ45823.1 Cag pathogenicity island protein Virulence cag PAI Protein 7e-31 96
cag1 ABQ45827.1 Cag pathogenicity island protein Virulence cag PAI Protein 9e-31 96
cag1 YP_005775724.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-30 96
HP0520 BAD13854.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-31 96
cag1 AAR03912.1 Cag1 Virulence cag PAI Protein 3e-30 96
cag1 AAR03943.1 Cag1 Virulence cag PAI Protein 2e-29 96
cag1 YP_003728746.1 cag pathogenicity island protein zeta Virulence cag PAI Protein 1e-29 96
cag1 ABQ45822.1 Cag pathogenicity island protein Virulence cag PAI Protein 1e-30 95
cag1 ABQ45825.1 Cag pathogenicity island protein Virulence cag PAI Protein 7e-31 95
cag1 YP_005777264.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
cag1 ABQ45824.1 Cag pathogenicity island protein Virulence cag PAI Protein 1e-30 95
cag1 ABQ45821.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
HP0520 BAD13827.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
cag1 ABQ45828.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
HP0520 BAD13909.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
HP0520 BAD13773.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-30 95
HP0520 BAD13964.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
HP0520 BAD13882.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-30 95
cag1 YP_005779069.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-30 95
HP0520 BAD13992.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
cag1 ABQ45819.1 Cag pathogenicity island protein Virulence cag PAI Protein 4e-30 95
cag1 YP_005774548.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-30 95
cag1 ABQ45818.1 Cag pathogenicity island protein Virulence cag PAI Protein 5e-30 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
orf6 NP_223187.1 cag island protein VFG0280 Protein 5e-31 96