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Name : clpB (jhp0249) Accession : NP_222970.1 Strain : Helicobacter pylori J99 Genome accession: NC_000921 Putative virulence/resistance : Virulence Product : heat shock protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 269487 - 272057 bp Length : 2571 bp Strand : + Note : similar to H. pylori 26695 gene HP0264 DNA sequence : ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAAACTTTAGACAGCGCGATCGCTTTAGCCTTACACCATAAAAA CGCTGAAGTAACGCCCATGCACATGCTTTTTGCCATGCTCAATAACTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA TGCCTGTGGATATTGAAGCTTTAAAACTTAGCGTTCAAAGCGAGTTGAATAAGTTCGCTAAAGTTTCACAAATCAGCAAG CAAAACATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT CATCGCTACCGATGCGTATCTTTTGGCGAATATGAATCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACACTAAGGAAT TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCAGGACTATCCAGGATAAAAACGACGATTCCAACTTGGAAAGTTTGGAA AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTGGATCCCGTGATTGGAAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATCAGAAAAACAAAAAATAACCCTATTTTACTGGGCGAGCCTGGAGTGGGGAAAACGGCTGTTG TGGAAGGGTTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGGGTTGTCGCTTTAGATTTG AGCTTATTGGTGGCTGGGGCGAAATACAGAGGCGAGTTTGAAGAGCGCCTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTGGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCCA ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTCTAAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT AAGGGGGTTGAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGAGCGGCCCAATTAAAAATG CAAATGGAATCAGAGCCGGCCAAACTCTCTAGCGTGAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA AATGGAAAACAAAGAGAGCAACCACAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAGGAAAAAATCC AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAAGGAAATTTCACGCTTGAAAATGGAAATGGAGGGCTTGAAA AAAGAAGCCGAAAGGTTTAAACGCAATGGGGATTACCAGCAAGCGGCTGAAATTGAATACTCTAAAATCCCTGAAAAGGA AAAGAAAGAAAAAGAATTGCAGCATAAATGGGAAACGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGGGTGGTGGGGCAAGAAAAAGCGCTCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCTGGGCTTAGCGATAGCAACAAGCCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATACGAATTGACATGAGCGAATACATGGAAAAG CACGCTATCAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG CAGAAAACCTTATAGCGTAGTGTTATTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTACAGGTTT TAGATGAGGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG GCTAGCGGCGCGCTTTTAGAAGAGGATTTGAGTGAAGCCGATAAACAAAAAGCGATCAAAGAGAGCCTGAGACAATTCTT CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTATCATCAATATCGTGG GGATACTCTTTGAAAACGTTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAAAAGCAAAAGAATTG ATCGCCGAAGCGGGGTTTGACAGATTTTATGGCGCTAGACCCCTAAAACGCGCGCTCTATGAAATGGTAGAAGACAAGCT CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAGATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSAIALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISK QNIQLNQALIQSLENAQGLMAKRGDSFIATDAYLLANMNLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLE KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLK KEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGALLEEDLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENVQKKALERGINITLDEKAKEL IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-99 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_222970.1 | heat shock protein | VFG2076 | Protein | 3e-108 | 41 |
