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Name : lysS (aq_1202) Accession : NP_213822.1 Strain : Aquifex aeolicus VF5 Genome accession: NC_000918 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 844743 - 846536 bp Length : 1794 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGCTTTCCCTCCTTTCCTCAGAGATCTTTTTTTCTGCCATACAATATAATTTATCCCTTATGGAAGAGGTAAGACTCAA AAAGCTCCAGGAACTCAGGGAAAAAGGAATAAACCCCTACCCCTACAGGTTTGAAGTTACGGACTTTATAGGAAACATAA GGAAACAGTACGAGGAAGAGCCTCCTGAGAACTACAAAGTTCGGGTTAAAGGTGTGGCTAAAAGGGTTTCCAGAACGGAA AACGGCTACATGGTAAGGCTTGCAGACGAGAAGGGGATAGAGATACTTGTCTTCACGAAGGAGGAAGGGTTAAAACCAAA GGAAAGTTATACTTTTGAAGGGATTTTAAAAAGGGTTGAAGGAAAACTCAGCCTGGTGGAAGCCGTTCTCACTGAGGAAG AAGGGGAAGAAGTTTACAAGATAAAGGAACAGTTTGATTACGACCCAAACTTCAGACCCGTTTCCTTGGCGGGAAGACTC GTTTCTATGAGAAGTATGGGGAAGGCTATATTCGGACACATTCAGGATCTCACGGGAAAGATACAGATATACCTCAAAAA AGACGTAATAGGCGAGGAAAAGCTGAAGTTCTTTAACGATTACATAGACGTAGGGGATATTGTAGGAGTAAGGGGGAAGC TCTTTAGAACGAACACGGGAGAGCTCACCGTTGAAGTTGAAGAGTACCAACTCCTCGCAAAGTCCCTGCACCCACTTCCG GAAAAGTGGCACGGGCTCAAGGACGTGGAAGTTCGCTACAGGCAAAGGTACCTTGACCTTATCGCTAACCCCGAGGCGAG AAGGATATTCATGCTGAGGACCAAACTCATAACGGAAATGCGGAAGTTCTTTGAGATGCACGGATTTATAGAGGTGGAAA CTCCCATACTCCAGCCAATAGCGAGCGGTGCAAACGCAAGACCCTTCGTGACTTATCACAACTTCCTTGAAACAGAGCTT TACCTCAGGATAGCCCCGGAACTCTACCTCAAGAGATTAATCGTAGGAGGCTTTCCGAGGGTTTACGAGATAGGAAAGAA CTTCAGGAACGAGAGCGTGGACAGGACACACAACCCAGAATTTACTATGGTTGAGTTTTACGCCGCTTACTGGGATTACC ACGACCTTATAAAGTTTACAGAGGATATGTTCGTTTATCTCCTTGAAAAAACCTTAGGAACTCTGAAGGTAAAGTACGGA GAGTGGGAGCTTGATTTTTCACCGCCTTTTAAGAAGGTTCGCTACTTTGACCTCTTAAAAGAGAAGACCGGAAAGGATAA GGACTTTTTCCTGAAAGACCTTGAAGGCTTGAGGAAGCTAGCCAAGGAACTTGAAATTCCCGATGTAGAGAGGATGACTC ACGCAAAGCTCCTTGACAAAGTTTTTGAAAAGGTTGCGGAGGAAGATTTAATCCAACCTACATTCGTAATAGACTTTCCG AAAATCCTCTCACCTCTTGCGAAAACCCACAGGGAGGACCCCGACCTCGTTGAGAGATTTGAGCTTATCATCGCACGTTA CGAGGTGGCGAACGCATACACCGAGCTGAACGATCCCTTTGACCAAAAGGAAAGATTTTTAGAGCAGCTCAAAGAAAAGC AAATGGGTGACGAAGAGGCTATGGATATGGATGAGGACTTTATAAGGGCACTTGAATACGGAATGCCTCCTACCGCAGGT GAAGGTATAGGAATAGACAGACTAGTTATGATATTGGCAAATACGGACTCTATCAGAGAGGTTATTCTCTTCCCTCAATT AAAGCCGGAAAAAAAGAAGAAGGAAGCCCCTTAA Protein sequence : MLSLLSSEIFFSAIQYNLSLMEEVRLKKLQELREKGINPYPYRFEVTDFIGNIRKQYEEEPPENYKVRVKGVAKRVSRTE NGYMVRLADEKGIEILVFTKEEGLKPKESYTFEGILKRVEGKLSLVEAVLTEEEGEEVYKIKEQFDYDPNFRPVSLAGRL VSMRSMGKAIFGHIQDLTGKIQIYLKKDVIGEEKLKFFNDYIDVGDIVGVRGKLFRTNTGELTVEVEEYQLLAKSLHPLP EKWHGLKDVEVRYRQRYLDLIANPEARRIFMLRTKLITEMRKFFEMHGFIEVETPILQPIASGANARPFVTYHNFLETEL YLRIAPELYLKRLIVGGFPRVYEIGKNFRNESVDRTHNPEFTMVEFYAAYWDYHDLIKFTEDMFVYLLEKTLGTLKVKYG EWELDFSPPFKKVRYFDLLKEKTGKDKDFFLKDLEGLRKLAKELEIPDVERMTHAKLLDKVFEKVAEEDLIQPTFVIDFP KILSPLAKTHREDPDLVERFELIIARYEVANAYTELNDPFDQKERFLEQLKEKQMGDEEAMDMDEDFIRALEYGMPPTAG EGIGIDRLVMILANTDSIREVILFPQLKPEKKKKEAP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-100 | 50 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-74 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_213822.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-101 | 50 |
