Gene Information

Name : HP0538 (HP0538)
Accession : NP_207334.1
Strain : Helicobacter pylori 26695
Genome accession: NC_000915
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 569868 - 570788 bp
Length : 921 bp
Strand : +
Note : similar to GP:1752690 percent identity: 95.27; identified by sequence similarity

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAGAATTAGTGGCTTTGGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGACG
ACGAAGAAGTTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCAAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTACCCCTTTGAATGACAACCCTAATAGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGGAGCTTTTGTGAAACCTGCTACTCCGCTTGTGCCTGAT
GAGTGGAGAACGCCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTATGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AATTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGGAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINATPLNDNPNSNSSTETKSNKDDNFDEMINKVNGAFVKPATPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 8e-125 100
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 3e-122 98
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 1e-122 98
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-120 97
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-120 97
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-120 97
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-117 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 8e-119 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-120 97
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-114 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-120 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 96
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-120 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-115 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-121 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 9e-121 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-116 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 96
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-114 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-116 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) VFG0297 Protein 4e-125 100