|
Name : rhcR (NGR_a00610) Accession : NP_444164.1 Strain : Genome accession: NC_000914 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 77954 - 78622 bp Length : 669 bp Strand : - Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response DNA sequence : ATGACTGAAATGCAGCCGGCAATTCTGGCCCTTCTTGCGATAACCGCGGCACTCGGCTTGCTGGTGTTAGCGGTCGTCAC AACCACGGCATTTGTAAAAGTATCTGTTGTTCTATTCCTCGTCCGCAACGCACTCGGGACCCAGACGATACCACCTAACA TAGTGCTGTACGCAGCCGCACTTATCCTCACCATGTTCGTTAGCGCACCCGTTGCTGAGCAGACCTATGATCGGATAACA GATCCGAGACTCCGTTATCAATCGCTCGACGACTGGGCTGAAGCCGCCAAAGCAGGAAGTCAGCCCTTGCTTGAACATCT CAAGAAGTTCACAAACGAAGAGCAGCGGCGATTTTTCCTCTCCTCGACGGAAAAGGTCTGGCCTGAGGAAATGCGCGCTG GAGTTACAGCAGATGATTTCGCCATTCTTGTACCATCTTTTCTGATATCAGAACTAAAGCGCGCGTTCGAAATCGGCTTC CTCCTTTATCTACCCTTTATCGTCATTGATCTTATCGTCACGACGATATTGATGGCCATGGGGATGTCGATGGTATCCCC GACGATTATAGCTGTCCCGTTCAAACTATTCTTGTTCGTCGCTATTGATGGCTGGTCAAGATTGATGCACGGACTTGTGC TCAGTTATACGATGCCGGGAGCTTTATGA Protein sequence : MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRIT DPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGF LLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-38 | 52 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-36 | 48 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-37 | 48 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-36 | 48 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-36 | 48 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-36 | 48 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 7e-37 | 48 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-36 | 48 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-37 | 48 |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 5e-32 | 46 |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 4e-32 | 46 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-32 | 45 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 1e-32 | 44 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-33 | 44 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-31 | 44 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 8e-31 | 44 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 1e-34 | 43 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 1e-34 | 43 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 1e-34 | 43 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 5e-35 | 43 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 6e-29 | 42 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 6e-29 | 42 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 8e-29 | 42 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 6e-29 | 42 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 8e-29 | 42 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 6e-29 | 42 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 3e-28 | 42 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 7e-34 | 41 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 6e-29 | 41 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 9e-29 | 41 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 6e-29 | 41 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 9e-29 | 41 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 9e-29 | 41 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-28 | 41 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-28 | 41 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 6e-29 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rhcR | NP_444164.1 | type III secretion system protein | VFG0188 | Protein | 3e-38 | 52 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG0394 | Protein | 5e-37 | 49 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG0044 | Protein | 6e-39 | 48 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG2338 | Protein | 1e-24 | 42 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG1012 | Protein | 8e-31 | 41 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG1773 | Protein | 8e-30 | 41 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG0715 | Protein | 3e-29 | 41 |
| rhcR | NP_444164.1 | type III secretion system protein | VFG0827 | Protein | 3e-29 | 41 |
