Gene Information

Name : slr0947 (slr0947)
Accession : NP_441728.2
Strain : Synechocystis sp. PCC 6803
Genome accession: NC_000911
Putative virulence/resistance : Virulence
Product : OmpR subfamily protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2012754 - 2013485 bp
Length : 732 bp
Strand : +
Note : -

DNA sequence : 
TTGGAAACCAATAAAGAAAGGATATTGGTGGTCGATGACGAGGCCAGCATCCGACGCATACTGGAAACCCGTTTATCCAT
GATTGGCTATGAAGTGGTGACCGCTGCCGACGGTGAAGAGGCGATCGCCACTTTCCATGAGAGCGACCCCGATTTGGTGG
TGTTGGATGTGATGATGCCCAAGCTGGACGGCTACGGCGTTTGCCAAGAACTACGTAAAGAATCGGACATTCCCATTATT
ATGCTTACCGCCCTGGGGGATGTGGCCGATCGCATTACCGGTTTGGAACTGGGGGCCGATGATTATGTGGTGAAGCCCTT
TTCCCCCAAGGAATTGGAAGCTAGAATCCGGTCCGTGCTACGGCGGGTGGACAAAAACGGTATGCCGGGCATTCCCAGTT
CGGGCGTGTTGCAAATTGCCACCATTCGCATTGATACCAACAAGCGTCAAGTGTATAAAGGGGATGAGCGCATCCGCCTA
ACAGGAATGGAATTTAGCCTGTTGGAATTGTTGGTGAGTCGCTCCGGAGAGCCCTTTTCCCGTTCGGAAATTCTCCAGGA
AGTGTGGGGCTACACCCCCGAACGCCATGTGGATACCAGGGTGGTGGACGTGCATATTTCCCGCCTGCGGGCCAAACTAG
AGGAAGACCCCAGCAATCCCGAATTAATTCTTACTGCCCGGGGCACCGGTTACCTGTTCCAACGCATTCTGGAACCGGGG
GAAGAACCGTAA

Protein sequence : 
METNKERILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQELRKESDIPII
MLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRL
TGMEFSLLELLVSRSGEPFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPG
EEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
slr0947 NP_441728.2 OmpR subfamily protein NC_002952.2859905.p0 Protein 2e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_009782.5559369.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_002951.3237708.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_002758.1121668.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_009641.5332272.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_013450.8614421.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_007793.3914279.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_007622.3794472.p0 Protein 2e-46 48
slr0947 NP_441728.2 OmpR subfamily protein NC_002745.1124361.p0 Protein 4e-46 48
slr0947 NP_441728.2 OmpR subfamily protein BAC0125 Protein 2e-39 47
slr0947 NP_441728.2 OmpR subfamily protein NC_003923.1003749.p0 Protein 4e-46 47
slr0947 NP_441728.2 OmpR subfamily protein AE000516.2.gene3505. Protein 4e-44 47
slr0947 NP_441728.2 OmpR subfamily protein HE999704.1.gene2815. Protein 6e-41 44
slr0947 NP_441728.2 OmpR subfamily protein NC_012469.1.7685629. Protein 8e-42 44
slr0947 NP_441728.2 OmpR subfamily protein CP000034.1.gene3671. Protein 2e-39 44
slr0947 NP_441728.2 OmpR subfamily protein BAC0197 Protein 2e-34 42
slr0947 NP_441728.2 OmpR subfamily protein BAC0083 Protein 5e-36 42
slr0947 NP_441728.2 OmpR subfamily protein CP001918.1.gene5135. Protein 9e-26 42
slr0947 NP_441728.2 OmpR subfamily protein BAC0638 Protein 7e-28 42
slr0947 NP_441728.2 OmpR subfamily protein BAC0533 Protein 2e-29 41
slr0947 NP_441728.2 OmpR subfamily protein NC_012469.1.7686381. Protein 5e-40 41
slr0947 NP_441728.2 OmpR subfamily protein CP000647.1.gene4257. Protein 2e-29 41
slr0947 NP_441728.2 OmpR subfamily protein CP004022.1.gene3215. Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
slr0947 NP_441728.2 OmpR subfamily protein VFG1390 Protein 6e-39 43
slr0947 NP_441728.2 OmpR subfamily protein VFG0596 Protein 1e-30 42
slr0947 NP_441728.2 OmpR subfamily protein VFG1386 Protein 4e-36 42
slr0947 NP_441728.2 OmpR subfamily protein VFG1389 Protein 3e-32 42