Gene Information

Name : yfeD (HI0359)
Accession : NP_438521.1
Strain : Haemophilus influenzae Rd KW20
Genome accession: NC_000907
Putative virulence/resistance : Virulence
Product : iron (chelated) ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 383822 - 384637 bp
Length : 816 bp
Strand : -
Note : similar to PID:1245464 SP:Q56955 PID:1245467

DNA sequence : 
ATGTTTGATTGGCTTTTAGAACCGCTACAATTTGAGTTTATGCAAAATGCCTTATTGACCGCATTGATTGTTTCGATTAT
CTGTGCGTTACTTTCTTGCTATTTAGTCTTGAAAGGTTGGTCATTAATGGGTGATGCAATTTCTCACGCTGTATTACCTG
GTATTGTACTTGCTTATTTGGCAGGAATTCCTTTAGCCATTGGTGCATTTTTCTCGGGTATTTTTTGTTCGCTTGGTGTG
GGATATTTGAAAGAAAATAGCCGTATAAAAGAAGATACCGCAATGGGCATTGTATTTTCTGGAATGTTTGCCATTGGTCT
TGTTATGTTTACCAAAATTCAAACAGAAGAGCATTTAACCCATATTTTGTTTGGTAATGTGTTGGGTGTAAGTCATCAAG
AACTTATTCAAAGTGCGGTCATTTCTGCGATAATTTTTTGTCTGATTGTCTTTAAACGTAAAGACTTTCTGCTTTATTGT
TTTGATCCAAGTCACGCCCGTGTTGCAGGACTTTCTCCTAAAATTTTACATTATGGTTTATTAATTCTACTTGCTTTAAC
CATTGTAAGCACGATGCAAGTGGTAGGTGTTATTTTGGTGGTGGCAATGTTAATTGCACCAGGAATTACCGCACTTACTC
TTACTAAATCTTTTGATAAAATGTTATGGGTTGCTATTGCAAGTTCCATTGCATCAAGCTTAATTGGCGTAATATTGAGC
TATCATTTTGATGCCTCAACAGGTGCTTGTATTATTCTTCTGCAAGCCGCATTTTTTGTTATAGCATTAGCTTATAGCAA
GATTAGAATAAGATAA

Protein sequence : 
MFDWLLEPLQFEFMQNALLTALIVSIICALLSCYLVLKGWSLMGDAISHAVLPGIVLAYLAGIPLAIGAFFSGIFCSLGV
GYLKENSRIKEDTAMGIVFSGMFAIGLVMFTKIQTEEHLTHILFGNVLGVSHQELIQSAVISAIIFCLIVFKRKDFLLYC
FDPSHARVAGLSPKILHYGLLILLALTIVSTMQVVGVILVVAMLIAPGITALTLTKSFDKMLWVAIASSIASSLIGVILS
YHFDASTGACIILLQAAFFVIALAYSKIRIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-56 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-57 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-56 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-56 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-56 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_438521.1 iron (chelated) ABC transporter permease BAC0442 Protein 2e-69 62
yfeD NP_438521.1 iron (chelated) ABC transporter permease BAC0352 Protein 5e-57 55
yfeD NP_438521.1 iron (chelated) ABC transporter permease BAC0441 Protein 3e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_438521.1 iron (chelated) ABC transporter permease VFG0528 Protein 5e-57 55