Gene Information

Name : dnaB (HI1574)
Accession : NP_439720.1
Strain : Haemophilus influenzae Rd KW20
Genome accession: NC_000907
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 1641702 - 1643216 bp
Length : 1515 bp
Strand : +
Note : unwinds double stranded DNA

DNA sequence :
GTGGATTTTTCCACCGTTTTTTATTTCCTTTTTTCACCGCACTTTTCACTTAAATCCAATAGATATTTGCGGTATCATAG
ACGACATTCTAGTATCGAAATAAGTCCTATGGCATCACAACCTCAAATCAAATCTTCAGACAAAAAAACAGCACAAGTTA
GCATTCCTCCGCACTCAACTGAGGCTGAACAAGCCGTGTTGGGTGGCATCATGCTGAGCAATCAACATTGGGATGGCATT
GCTGAACGTGTGATTGCTGACGATTTTTATACTTTTCAGCATCGTCTAATTTTTACAGAAATGGAACATCTAATGCGTAA
TCAATCGCCTATTGATTTAATTACGCTAGATCAAGCCTTAAGAAGCCGTGGTGTAAGCGATGAAGTAGGTGGATTTGCCT
ATCTAGCAGAGCTTTCCAATAATACTCCGAACGCCATTAATATTTTGGCTTATGCAGATATCGTGCGCGAGAAAGCCATA
TTACGAGAACTTATTTCGGTAGGGAATCGCATTGCTGAAAATAGCTATTCTCCTAAAGGGCAAGACATTAAGTTAATTCT
TGATGAGGCTGAGCGTGAAGTATTTGCGATTGCAGAAAAACGTACGACTTCTAGCGAAGGCCCACAAAATGTGATCAATG
TGCTAGAAAGTACGATTGAAAAAATCGATATTTTAAGCAAACTTGAAAATCATTCAGGTGTAACAGGTGTTACGACGGGC
TTTACCGATCTTGATAAAAAAACGGCTGGTTTACAACCTTCTGACTTAATTATCGTTGCGGCACGTCCGTCAATGGGTAA
AACCACTTTCGCCATGAACCTTTGCGAAAATGCCGCAATGGCAAGTGAAAAACCCGTTTTAGTATTTAGTTTAGAAATGC
CAGCAGAACAAATTATGATGCGTATGATCGCTTCCCTTGCTCGCGTTGATCAAACTAAAATCCGAACAGGTCAAAATTTA
GATGAAATCGAGTGGAACAAAATTGCCAGCGTAGTAGGAATGTTCAAGCAAAAAAATAATCTTTTTATCGATGATTCTTC
AGGTCTAACACCTACCGATGTTCGTTCGCGCGCACGCCGAGTTTATCGTGAAAATGGTGGATTAAGTATGATTATGGTGG
ATTATTTGCAATTAATGCGCGCACCAGCATTTTCAGATAACCGAACACTAGAAATCGCAGAAATTTCTCGCTCCCTCAAA
GCACTCGCCAAAGAATTACAAGTGCCAGTAGTCGCCCTTTCTCAGTTAAATCGTACTTTAGAACAACGTGGAGACAAACG
CCCTGTAAACTCAGATTTACGTGAATCTGGCTCTATTGAACAAGATGCAGACTTGATTATGTTTATTTATCGTGATGAAG
TCTATAACGATAACTCGGAAGATAAAGGTGTTGCAGAAATTATTATCGGTAAACAGCGTAACGGCCCAATTGGTCGAGTG
CGGTTAAAATTTAATGGACAATTTTCACGCTTCGACAATCTCGCCGAACAACGTGAATATCGAGATGATTATTAA

Protein sequence :
MDFSTVFYFLFSPHFSLKSNRYLRYHRRHSSIEISPMASQPQIKSSDKKTAQVSIPPHSTEAEQAVLGGIMLSNQHWDGI
AERVIADDFYTFQHRLIFTEMEHLMRNQSPIDLITLDQALRSRGVSDEVGGFAYLAELSNNTPNAINILAYADIVREKAI
LRELISVGNRIAENSYSPKGQDIKLILDEAEREVFAIAEKRTTSSEGPQNVINVLESTIEKIDILSKLENHSGVTGVTTG
FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMIASLARVDQTKIRTGQNL
DEIEWNKIASVVGMFKQKNNLFIDDSSGLTPTDVRSRARRVYRENGGLSMIMVDYLQLMRAPAFSDNRTLEIAEISRSLK
ALAKELQVPVVALSQLNRTLEQRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSEDKGVAEIIIGKQRNGPIGRV
RLKFNGQFSRFDNLAEQREYRDDY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-97 50
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-100 50
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-100 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 7e-101 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-84 49
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-96 49
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 6e-90 48
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 6e-90 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 3e-81 44