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Name : serS (PAB0881) Accession : NP_127011.1 Strain : Pyrococcus abyssi GE5 Genome accession: NC_000868 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1290539 - 1291906 bp Length : 1368 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGGACATAAAGCTCATACGTGAAAATCCCGAGCTCGTGAAGAACGATCTAAAAAAGAGGGGAGAACTTGAAAAGAT AAAGTGGATAGACGAGATTCTAAAGTTGGACGCTGAGTGGAGGGCCAAGCTAAAGGAAATAAACAAACTCAGGCATGAGA GGAATAAAATAGCCATAGAAATAGGAAAGAGGAGAAAGAAAGGAGAGCCAGTCGAAGAGCTTCTAGCTAAGAGCAAAGAG ATAGTGAAAAGGATAGAAAGTCTGGAAAAGGAAGTTGAAGAGCTCAAGAAGAAGATTGACTATTACTTATGGAGGCTTCC CAACATAACACATCCAAGCGTTCCCATAGGAGAAAGCGAAGAGGATAACGTCCCAATTAGATTCTGGGGGAAAGCTAGGG TCTGGGAAGGTCACCTAGAGAGATTCCTGGAGCAGAGCCAGGGGAAAATGGAGTACGAGGTTCTCGAGTGGAGGCCGAAG TTGCACGTTGACCTGCTCGAAATCCTAGGAGGAGCGGACTTTGCAAGGGCAGCCAAGGTTAGCGGCTCGAGGTTCTACTA CCTCCTAAACGAGATAGTTATACTGGACTTAGCGTTAATTAGGTTCGCCCTCGATGAGCTCATAAAGAAGGGCTTCACTC CAGTAATCCCACCTTACATGGTTAGAAGATTCGTGGAGGAGGGCTCAACCACCTTCGAGGATTTCGAGGATGTCATATAC AAGGTTGAAGGTGAGGACCTATACTTAATCCCGACCGCTGAGCATCCTTTAGCTGGAATGCACGCAAATGAGATCTTAGA TGGAAAGGATTTACCGCTCCTCTACGTTGGAATATCGCCTTGCTTCAGGAAAGAGGCGGGAACTGCAGGAAAGGATACCA AGGGAATATTCAGGGTTCACCAATTCCACAAGGTTGAGCAGTTCGTGTACTCTAGGCCTGAGGAGAGCTGGGAGTGGCAC GAGAGGATAATAAGGAACGCCGAGGAACTCTTCCAGAAGCTCGAGATACCGTATAGGGTAGTGAACATATGCACTGGAGA CCTTGGCTACGTGGCGGCTAAGAAGTACGATATAGAAGCTTGGATGCCTGGTCAAGGAAGATTTAGGGAAGTAGTTTCGG CAAGCAACTGTACCGATTGGCAAGCTAGAAGGCTCAACATAAGATTTAGGGATAGAACAGATGAAAAGCCACGCTACGTT CACACCTTAAATTCAACGGCCATAGCAACTTCTAGAGCGATAGTTGCGATACTTGAGAACCATCAAGAGGAAGATGGAAC CGTGAAGATTCCGAAGGTTCTCTGGAAGTACACCGGCTTCAAGGAAATAGTTCCCGTAGAGAAGAAGGAGAGGTGTTGCT CAAGTTGA Protein sequence : MLDIKLIRENPELVKNDLKKRGELEKIKWIDEILKLDAEWRAKLKEINKLRHERNKIAIEIGKRRKKGEPVEELLAKSKE IVKRIESLEKEVEELKKKIDYYLWRLPNITHPSVPIGESEEDNVPIRFWGKARVWEGHLERFLEQSQGKMEYEVLEWRPK LHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDELIKKGFTPVIPPYMVRRFVEEGSTTFEDFEDVIY KVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGISPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWH ERIIRNAEELFQKLEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGRFREVVSASNCTDWQARRLNIRFRDRTDEKPRYV HTLNSTAIATSRAIVAILENHQEEDGTVKIPKVLWKYTGFKEIVPVEKKERCCSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-72 | 41 |
