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Name : TM1548 (TM1548) Accession : NP_229348.1 Strain : Thermotoga maritima MSB8 Genome accession: NC_000853 Putative virulence/resistance : Virulence Product : lipopolysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1541839 - 1543656 bp Length : 1818 bp Strand : + Note : similar to GP:1773343 percent identity: 61.19; identified by sequence similarity DNA sequence : ATGGTAAGAAAGGCGCTCCTTTTTGTAATCGACGTGGCTCTGACGTACTTTGCAGGTGTGGTGGCGCTCTTTTCGAGGTT TGGTTTTGACTTTCAGGAAATGAGCCGTTATGACGAGTCCGTGATCGTATACACTGTTATCTCAGCCGTTGTCTACATTC TGAACGGAAACTATTCCATCGTGTGGGAATACGCTAATGCCAGAGACTTTCTCATTCTCATAAGAGGAAGCGTTATCTCC TATCTTTCCAACCTCGCGTTTTTTTATGTTTACAGGGGAATAGTTCTTCCCAGATCCGTGGGCTTTGCTGTCTTTCTTGG ATCGATGGTTCTTCTCGTACTGAGCAGGATCACATGGCAGTGGATGATTGTGAACGGAAGAGGTAAAGTCCCAGGGGAAA AGAGAATACTGATCATAGGAGCAGGAGATGCGGGAGTCTCTATTCTCGAAGAATTTGAGAAACACCCCCATTTAGGAAAA ATAGTGGCCTTCGTGGACGATTCTCCCAGAAAGATCGGTCGAAAGGTGAGGGGAGTTCCGGTTTTTGGACCAATAGAGAA AACAATGGAATTCGTGGAGAAAATGAACGTGGACGAAATCGTGATAGCTATACCTTCAGCTTCCAGAGCTGAGATGGAAC GAATTCTCAAAAGCATCGATTTGAAAAAGGTCAGAGTAAAGACCCTCCCCAGTGTGAGAGAGCTGATAGAAGGACGTGTC AGGATCTCCCATCTGAAGGAAATATCCATAGAAGATCTTCTGGGTCGCGAAGAAGTGAAGGTGGATTTTCATGAAATAGG AAAATTCTTGAAAGGGAAGAAAATTCTTGTGACCGGAGCAGGAGGCAGTATCGGTTCTGAGCTTTGCAAGCAAATAGCCA GGATGAATCCAGCGGAGATCTTTCTTCTGGGCCACGGAGAAACCAGTATATATCTCATAAACGAGTTTCTCACCGAACAC TTTCCGGAGGTGAAGAAAAAAAGGATCATAGCGGATGTTGCCGACAGAAAGATAATGGAACACTGGTTGACCCAGCTGAG GCCGGACGTGATCTTCCACGTGGCAGCGCACAAGCACGTTCCTTTGATGGAGGAAAATCCGCTTGAGGCTTTCAGAGTGA ACGTTCTGGGAACGATGAATCTCGTGGAACTCTCCGAAAGGCTCGGTGTTAAGTATTTTGTTTTCATCTCGACAGACAAA GCGGTGAATCCCACTTCTGTGATGGGCCTCACCAAGAGGATAGCGGAACTCTACATCCTTTCGAGAGAAAAAAACAGCAC GAATTTCTCGATCGTGAGGTTTGGAAACGTTCTTGGAAGCAGGGGAAGCGTAGTGGAAAAATTTCGCCGTCAGATAGAAA AAGGTGGGCCTGTAACGGTGACGGATCCACGAATGAAGCGCTACTTCATGTCCATACCTGAGGCCGTCTCCCTCATTCTC CAGTCCCTTCTCTTCTCTTCCGGAAAGGATCTCTTCATTCTCGACATGGGAGAGCAGATACCCATCCTGAAGCTTGCGGA AACCATGATCATGCTTTCTGGATACACCCCTTACCAGGACATAAAGATAGTTTTCACCGGAATCAGGCCGGGGGAGAAGA TGTACGAAGAGTTGCTCTACCCTTACGAGGTGAAAGAGTTGACTCCACACTCGAAAATCTTCAGAGTGAAGACATCCGTT CTTCCAGGGAAAGAGAGCGTAGAACAGGCAATCAACAGAATGAAAGAAGCCTTCGAAAACAGCGACGTAAAAGGACTTCT CACCGAAATGAAAAAATTAGTCCCGGAGGCACAAATAAATGTGGGAAGCGATAATTAG Protein sequence : MVRKALLFVIDVALTYFAGVVALFSRFGFDFQEMSRYDESVIVYTVISAVVYILNGNYSIVWEYANARDFLILIRGSVIS YLSNLAFFYVYRGIVLPRSVGFAVFLGSMVLLVLSRITWQWMIVNGRGKVPGEKRILIIGAGDAGVSILEEFEKHPHLGK IVAFVDDSPRKIGRKVRGVPVFGPIEKTMEFVEKMNVDEIVIAIPSASRAEMERILKSIDLKKVRVKTLPSVRELIEGRV RISHLKEISIEDLLGREEVKVDFHEIGKFLKGKKILVTGAGGSIGSELCKQIARMNPAEIFLLGHGETSIYLINEFLTEH FPEVKKKRIIADVADRKIMEHWLTQLRPDVIFHVAAHKHVPLMEENPLEAFRVNVLGTMNLVELSERLGVKYFVFISTDK AVNPTSVMGLTKRIAELYILSREKNSTNFSIVRFGNVLGSRGSVVEKFRRQIEKGGPVTVTDPRMKRYFMSIPEAVSLIL QSLLFSSGKDLFILDMGEQIPILKLAETMIMLSGYTPYQDIKIVFTGIRPGEKMYEELLYPYEVKELTPHSKIFRVKTSV LPGKESVEQAINRMKEAFENSDVKGLLTEMKKLVPEAQINVGSDN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-79 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TM1548 | NP_229348.1 | lipopolysaccharide biosynthesis protein | VFG1300 | Protein | 6e-80 | 42 |
| TM1548 | NP_229348.1 | lipopolysaccharide biosynthesis protein | VFG0029 | Protein | 3e-68 | 41 |
