|
Name : smpB (CT076) Accession : NP_219579.1 Strain : Chlamydia trachomatis D/UW-3/CX Genome accession: NC_000117 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 90560 - 91015 bp Length : 456 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGGCGTTAAGGAAATTGTTTCGAATCGCAAAGCTTTTCATCATTACGAGGTTTTAGAGACCTTGGATGCAGGGATTGT TTTAACAGGAACAGAAATTAAATCTCTGCGAGATCATGGTGGAAATTTGGGGGATGCTTATGTGACGATCTCTAAGGGAG AAGCTTGGCTATTACAGTCAAGTATAGCTCTATATCGGTTTGGGAATATCAATAATCATGAAGAGCGCCGCAAGCGCAAA CTTCTTTTACATAAGTACGAGATTCACAAACTAGACGCTCGCATTTCTCAAAAGGGATTGACGGTTGTGCCGCTTAGCTT TTTCTTTTCTAAAGGATTTGTCAAGGTGCGTATTGGCTGTTGCCGAGGGAAGAAAGCTCATGATAAGCGGCAGTCTATCA TTGAACGAGAAAAGAATCGTGAATTGGCTGCAGCTATGAAACGTTCTTATCGGTAA Protein sequence : MGVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIALYRFGNINNHEERRKRK LLLHKYEIHKLDARISQKGLTVVPLSFFFSKGFVKVRIGCCRGKKAHDKRQSIIEREKNRELAAAMKRSYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-23 | 47 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-24 | 44 |
