|
Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Salmonella enterica Ty21a (NC_021176) Location : 4391680 - 4526047 bp Size : 134368 bp GC content : 49.7 % GC bias (=GCregion - GCgenome) : -2.35 % |
| No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
| 1 | NA | YP_007928458.1 | 4391680-4391973 | 294 | + | hypothetical protein | - |
| 2 | NA | YP_007928459.1 | 4391970-4392461 | 492 | + | putative acetyltransferase | - |
| 3 | NA | YP_007928460.1 | 4392702-4393454 | 753 | - | nonspecific acid phosphatase precursor | - |
| 4 | NA | YP_007928461.1 | 4393853-4393996 | 144 | + | hypothetical protein | - |
| 5 | NA | YP_007928462.1 | 4394383-4395333 | 951 | + | hypothetical protein | - |
| 6 | NA | YP_007928463.1 | 4395330-4396694 | 1365 | + | replicative DNA helicase | - |
| 7 | NA | YP_007928464.1 | 4396687-4398486 | 1800 | + | hypothetical protein | - |
| 8 | NA | YP_007928465.1 | 4398476-4398703 | 228 | + | hypothetical protein | - |
| 9 | NA | YP_007928466.1 | 4398700-4398960 | 261 | + | hypothetical protein | - |
| 10 | NA | YP_007928467.1 | 4398947-4399669 | 723 | + | hypothetical protein | - |
| 11 | NA | YP_007928468.1 | 4399662-4399757 | 96 | + | hypothetical protein | - |
| 12 | NA | YP_007928469.1 | 4399754-4400311 | 558 | + | hypothetical protein | - |
| 13 | NA | YP_007928470.1 | 4400311-4400559 | 249 | + | hypothetical protein | - |
| 14 | NA | YP_007928471.1 | 4400556-4401899 | 1344 | + | hypothetical protein | - |
| 15 | NA | YP_007928472.1 | 4402488-4403264 | 777 | + | hypothetical protein | - |
| 16 | NA | YP_007928473.1 | 4403375-4405369 | 1995 | + | DNA topoisomerase III | - |
| 17 | NA | YP_007928474.1 | 4406037-4406486 | 450 | + | hypothetical protein | - |
| 18 | NA | YP_007928475.1 | 4406567-4406785 | 219 | + | hypothetical protein | - |
| 19 | NA | YP_007928476.1 | 4406798-4407334 | 537 | + | single-stranded DNA-binding protein | Virulence |
| 20 | NA | YP_007928477.1 | 4407400-4408008 | 609 | + | Ytl2 | - |
| 21 | NA | YP_007928478.1 | 4408033-4408350 | 318 | + | Ytl2 | - |
| 22 | NA | YP_007928479.1 | 4408515-4409759 | 1245 | + | hypothetical protein | Virulence |
| 23 | NA | YP_007928480.1 | 4409762-4410181 | 420 | + | hypothetical protein | Virulence |
| 24 | NA | YP_007928481.1 | 4411893-4413179 | 1287 | + | putative pilus assembly protein | Virulence |
| 25 | NA | YP_007928482.1 | 4413160-4413747 | 588 | + | pilus assembly protein | - |
| 26 | NA | YP_007928483.1 | 4413757-4415472 | 1716 | + | nucleotide-binding protein | Virulence |
| 27 | NA | YP_007928484.1 | 4415469-4416554 | 1086 | + | hypothetical protein | Virulence |
| 28 | NA | YP_007928485.1 | 4416644-4417189 | 546 | + | prepilin | Virulence |
| 29 | NA | YP_007928486.1 | 4417199-4417675 | 477 | + | hypothetical protein | Virulence |
| 30 | NA | YP_007928487.1 | 4417672-4418334 | 663 | + | prepilin peptidase | Virulence |
| 31 | NA | YP_007928488.1 | 4418331-4419638 | 1308 | + | prepilin | Virulence |
| 32 | NA | YP_007928489.1 | 4419986-4421137 | 1152 | + | shufflon-specific DNA recombinase | - |
| 33 | NA | YP_007928490.1 | 4421234-4421701 | 468 | + | hypothetical protein | Virulence |
| 34 | NA | YP_007928491.1 | 4421913-4422788 | 876 | + | hypothetical protein | - |
| 35 | NA | YP_007928492.1 | 4423295-4424209 | 915 | + | hypothetical protein | - |
| 36 | NA | YP_007928493.1 | 4424489-4424968 | 480 | + | hypothetical protein | - |
| 37 | NA | YP_007928494.1 | 4424947-4425633 | 687 | + | hypothetical protein | - |
| 38 | NA | YP_007928495.1 | 4425669-4426169 | 501 | + | hypothetical protein | - |
| 39 | NA | YP_007928496.1 | 4426179-4426748 | 570 | + | hypothetical protein | - |
| 40 | NA | YP_007928497.1 | 4426768-4428858 | 2091 | + | hypothetical protein | - |
| 41 | NA | YP_007928498.1 | 4428848-4428994 | 147 | + | hypothetical protein | - |
| 42 | NA | YP_007928499.1 | 4429128-4429613 | 486 | + | hypothetical protein | - |
| 43 | NA | YP_007928500.1 | 4429832-4430104 | 273 | + | hypothetical protein | - |
| 44 | NA | YP_007928501.1 | 4430104-4430343 | 240 | + | hypothetical protein | - |
| 45 | NA | YP_007928502.1 | 4430373-4430735 | 363 | + | hypothetical protein | - |
| 46 | NA | YP_007928503.1 | 4430745-4431119 | 375 | + | hypothetical protein | - |
| 47 | NA | YP_007928504.1 | 4431116-4431769 | 654 | + | hypothetical protein | - |
| 48 | NA | YP_007928505.1 | 4431769-4432035 | 267 | + | hypothetical protein | - |
| 49 | NA | YP_007928506.1 | 4432658-4434136 | 1479 | + | hypothetical protein | - |
| 50 | NA | YP_007928507.1 | 4434123-4434572 | 450 | + | putative lipoprotein | - |
| 51 | NA | YP_007928508.1 | 4434572-4434988 | 417 | + | hypothetical protein | - |
| 52 | NA | YP_007928509.1 | 4434985-4437408 | 2424 | + | hypothetical protein | - |
| 53 | NA | YP_007928510.1 | 4437563-4437949 | 387 | + | hypothetical protein | - |
| 54 | NA | YP_007928511.1 | 4438104-4438496 | 393 | + | hypothetical protein | - |
| 55 | NA | YP_007928512.1 | 4438493-4439461 | 969 | + | hypothetical protein | - |
| 56 | NA | YP_007928513.1 | 4439674-4440906 | 1233 | + | hypothetical protein | - |
| 57 | NA | YP_007928514.1 | 4440903-4441235 | 333 | + | hypothetical protein | - |
| 58 | NA | YP_007928515.1 | 4441239-4442744 | 1506 | + | hypothetical protein | - |
| 59 | NA | YP_007928516.1 | 4442983-4444230 | 1248 | + | hypothetical protein | Virulence |
| 60 | NA | YP_007928517.1 | 4444215-4444856 | 642 | + | hypothetical protein | Virulence |
| 61 | NA | YP_007928518.1 | 4445067-4445372 | 306 | - | hypothetical protein | - |
| 62 | NA | YP_007928519.1 | 4446353-4446547 | 195 | + | hypothetical protein | - |
| 63 | NA | YP_007928520.1 | 4446875-4447795 | 921 | + | hypothetical protein | - |
| 64 | NA | YP_007928521.1 | 4448519-4448821 | 303 | + | hypothetical protein | - |
| 65 | NA | YP_007928522.1 | 4448917-4449297 | 381 | + | hypothetical protein | - |
| 66 | NA | YP_007928523.1 | 4449668-4449877 | 210 | + | hypothetical protein | - |
| 67 | NA | YP_007928524.1 | 4449895-4450347 | 453 | + | hypothetical protein | - |
| 68 | NA | YP_007928525.1 | 4450347-4450640 | 294 | + | hypothetical protein | - |
| 69 | NA | YP_007928526.1 | 4450718-4451176 | 459 | + | hypothetical protein | - |
| 70 | NA | YP_007928527.1 | 4451265-4453214 | 1950 | + | hypothetical protein | - |
| 71 | NA | YP_007928528.1 | 4453286-4454194 | 909 | + | hypothetical protein | - |
| 72 | NA | YP_007928529.1 | 4454268-4455167 | 900 | + | hypothetical protein | - |
| 73 | NA | YP_007928530.1 | 4455242-4455568 | 327 | + | hypothetical protein | - |
| 74 | NA | YP_007928531.1 | 4455668-4455937 | 270 | - | hypothetical protein | - |
| 75 | umuC | YP_007928532.1 | 4456069-4457343 | 1275 | - | DNA polymerase V subunit UmuC | - |
| 76 | NA | YP_007928533.1 | 4457562-4457939 | 378 | + | hypothetical protein | - |
| 77 | NA | YP_007928534.1 | 4458026-4458244 | 219 | - | putative positive regulator of late gene transcription | - |
| 78 | NA | YP_007928535.1 | 4458312-4459412 | 1101 | - | putative regulator of late gene expression | - |
| 79 | NA | YP_007928536.1 | 4459409-4459894 | 486 | - | putative phage tail protein | - |
| 80 | NA | YP_007928537.1 | 4459894-4462674 | 2781 | - | hypothetical protein | - |
| 81 | NA | YP_007928538.1 | 4462667-4462786 | 120 | - | hypothetical protein | - |
| 82 | NA | YP_007928539.1 | 4462801-4463103 | 303 | - | putative phage tail protein | - |
| 83 | NA | YP_007928540.1 | 4463158-4463673 | 516 | - | phage major tail tube protein FII | - |
| 84 | NA | YP_007928541.1 | 4463683-4464855 | 1173 | - | putative major tail sheath protein | - |
| 85 | NA | YP_007928542.1 | 4464958-4465176 | 219 | - | hypothetical protein | - |
| 86 | NA | YP_007928543.1 | 4465390-4466112 | 723 | + | invasion-associated secreted protein | Virulence |
| 87 | NA | YP_007928544.1 | 4466310-4466717 | 408 | - | putative phage tail fiber protein | - |
| 88 | NA | YP_007928545.1 | 4466724-4468343 | 1620 | - | phage tail fiber protein | - |
| 89 | NA | YP_007928546.1 | 4468340-4468945 | 606 | - | putative phage tail protein | - |
| 90 | NA | YP_007928547.1 | 4468938-4469846 | 909 | - | phage baseplate assembly protein | - |
| 91 | NA | YP_007928548.1 | 4469833-4470192 | 360 | - | phage baseplate assembly protein | - |
| 92 | NA | YP_007928549.1 | 4470189-4470767 | 579 | - | putative phage baseplate assembly protein | - |
| 93 | NA | YP_007928550.1 | 4470836-4471282 | 447 | - | putative phage tail completion protein | - |
| 94 | NA | YP_007928551.1 | 4471275-4471706 | 432 | - | putative phage tail protein | - |
| 95 | NA | YP_007928552.1 | 4471669-4471842 | 174 | - | hypothetical protein | - |
| 96 | NA | YP_007928553.1 | 4471802-4472227 | 426 | - | putative regulatory protein | - |
| 97 | NA | YP_007928554.1 | 4472227-4472604 | 378 | - | hypothetical protein | - |
| 98 | NA | YP_007928555.1 | 4472609-4473118 | 510 | - | phage lysozyme | - |
| 99 | NA | YP_007928556.1 | 4473099-4473314 | 216 | - | secretion protein | - |
| 100 | NA | YP_007928557.1 | 4473318-4473521 | 204 | - | putative phage tail protein | - |
| 101 | NA | YP_007928558.1 | 4473521-4473985 | 465 | - | putative capsid completion protein | - |
| 102 | NA | YP_007928559.1 | 4474079-4474729 | 651 | - | Terminase, endonuclease subunit (GpM) | - |
| 103 | NA | YP_007928560.1 | 4474733-4475797 | 1065 | - | putative major capsid protein | - |
| 104 | NA | YP_007928561.1 | 4475814-4476647 | 834 | - | putative capsid protein | - |
| 105 | NA | YP_007928562.1 | 4476790-4478556 | 1767 | + | terminase subunit | - |
| 106 | NA | YP_007928563.1 | 4478556-4479599 | 1044 | + | capsid portal protein | - |
| 107 | NA | YP_007928564.1 | 4479648-4480343 | 696 | - | hypothetical protein | - |
| 108 | NA | YP_007928565.1 | 4480363-4481427 | 1065 | - | hypothetical protein | - |
| 109 | NA | YP_007928566.1 | 4481424-4482488 | 1065 | - | hypothetical protein | - |
| 110 | NA | YP_007928567.1 | 4482812-4483045 | 234 | - | hypothetical protein | - |
| 111 | NA | YP_007928568.1 | 4483057-4483245 | 189 | - | hypothetical protein | - |
| 112 | NA | YP_007928569.1 | 4483413-4485821 | 2409 | - | hypothetical protein | - |
| 113 | NA | YP_007928570.1 | 4485812-4486672 | 861 | - | DNA adenine methylase | - |
| 114 | NA | YP_007928571.1 | 4486669-4487253 | 585 | - | putative exonuclease | - |
| 115 | NA | YP_007928572.1 | 4487250-4487477 | 228 | - | hypothetical protein | - |
| 116 | NA | YP_007928573.1 | 4487477-4487710 | 234 | - | hypothetical protein | - |
| 117 | NA | YP_007928574.1 | 4487778-4488119 | 342 | - | hypothetical protein | - |
| 118 | NA | YP_007928575.1 | 4488083-4488283 | 201 | - | hypothetical protein | - |
| 119 | NA | YP_007928576.1 | 4488291-4488800 | 510 | - | phage regulatory protein | - |
| 120 | NA | YP_007928577.1 | 4488833-4489075 | 243 | - | phage regulatory protein | - |
| 121 | NA | YP_007928578.1 | 4489192-4489824 | 633 | + | phage repressor protein cI | - |
| 122 | NA | YP_007928579.1 | 4489828-4490853 | 1026 | + | phage integrase | - |
| 123 | NA | YP_007928580.1 | 4490960-4491313 | 354 | - | umuDC operon-like protein | - |
| 124 | NA | YP_007928581.1 | 4491581-4491694 | 114 | + | hypothetical protein | - |
| 125 | NA | YP_007928582.1 | 4491960-4492217 | 258 | + | hypothetical protein | - |
| 126 | NA | YP_007928583.1 | 4492228-4493118 | 891 | + | putative methyltransferase | - |
| 127 | NA | YP_007928584.1 | 4493118-4493864 | 747 | + | methyltransferase type 11 | - |
| 128 | NA | YP_007928585.1 | 4494166-4496136 | 1971 | - | Vi polysaccharide export protein | Virulence |
| 129 | NA | YP_007928586.1 | 4496156-4497460 | 1305 | - | VI polysaccharide export inner-membrane protein | Virulence |
| 130 | NA | YP_007928587.1 | 4497483-4498178 | 696 | - | VI polysaccharide export ATP-binding protein | Virulence |
| 131 | NA | YP_007928588.1 | 4498204-4498998 | 795 | - | VI polysaccharide export inner-membrane protein | Virulence |
| 132 | NA | YP_007928589.1 | 4499008-4500075 | 1068 | - | VI polysaccharide export protein | Virulence |
| 133 | NA | YP_007928590.1 | 4500120-4501856 | 1737 | - | VI polysaccharide biosynthesis protein TviE | Virulence |
| 134 | NA | YP_007928591.1 | 4501856-4504342 | 2487 | - | VI polysaccharide biosynthesis protein | Virulence |
| 135 | NA | YP_007928592.1 | 4504375-4505421 | 1047 | - | Vi polysaccharide biosynthesis protein, epimerase | Virulence |
| 136 | NA | YP_007928593.1 | 4505424-4506701 | 1278 | - | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence |
| 137 | NA | YP_007928594.1 | 4506946-4507485 | 540 | - | VI polysaccharide biosynthesis protein | Virulence |
| 138 | NA | YP_007928595.1 | 4508026-4508214 | 189 | + | hypothetical protein | - |
| 139 | NA | YP_007928596.1 | 4508339-4509850 | 1512 | + | putative DNA helicase | - |
| 140 | NA | YP_007928597.1 | 4509834-4511423 | 1590 | + | hypothetical protein | - |
| 141 | NA | YP_007928598.1 | 4511587-4512600 | 1014 | + | phage integrase | - |
| 142 | NA | YP_007928599.1 | 4513027-4513320 | 294 | + | hypothetical protein | - |
| 143 | NA | YP_007928600.1 | 4513317-4513805 | 489 | + | hypothetical protein | - |
| 144 | NA | YP_007928601.1 | 4513985-4514437 | 453 | - | hypothetical protein | - |
| 145 | NA | YP_007928602.1 | 4519660-4520121 | 462 | + | hypothetical protein | - |
| 146 | NA | YP_007928603.1 | 4520118-4520339 | 222 | + | transcriptional regulatory protein | - |
| 147 | NA | YP_007928604.1 | 4520373-4520516 | 144 | - | hypothetical protein | - |
| 148 | NA | YP_007928605.1 | 4520732-4520962 | 231 | - | hypothetical protein | - |
| 149 | NA | YP_007928606.1 | 4521196-4521978 | 783 | + | hypothetical protein | - |
| 150 | NA | YP_007928607.1 | 4522317-4522412 | 96 | + | hypothetical protein | - |
| 151 | NA | YP_007928608.1 | 4522605-4522829 | 225 | - | bacteriophage integrase | - |
| 152 | NA | YP_007928609.1 | 4522959-4524239 | 1281 | - | hypothetical protein | - |
| 153 | NA | YP_007928610.1 | 4524553-4525812 | 1260 | - | bacteriophage integrase | - |
| 154 | tRNA-Phe | - | 4525972-4526047 | 76 | - | tRNA-Phe | - |